Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y34D9A.6
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Query: Y34D9A.6 CE25238 status:Partially_confirmed TR:Q9N456 protein_id:AAK29881.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
glutaredoxin Glutaredoxin 87.2 2.5e-24 1
DSBA DSBA-like thioredoxin domain 9.9 0.19 1
GST_N Glutathione S-transferase, N-terminal do 7.7 0.86 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSBA 1/1 14 36 .. 1 23 [. 9.9 0.19
GST_N 1/1 12 39 .. 1 29 [. 7.7 0.86
glutaredoxin 1/1 14 77 .. 1 69 [] 87.2 2.5e-24
Alignments of top-scoring domains:
DSBA: domain 1 of 1, from 14 to 36: score 9.9, E = 0.19
*->tvdeFFDfiCPyCylakerlekl<-*
v++F+ +CPyC+ a le++
Y34D9A.6 14 KVVVFSKSYCPYCHKARAALESV 36
GST_N: domain 1 of 1, from 12 to 39: score 7.7, E = 0.86
*->sstlklfngrgspraervrillalekGve<-*
ss++ +f+ + +p+++++r++l+ +v+
Y34D9A.6 12 SSKVVVFSKSYCPYCHKARAALE-SVNVK 39
glutaredoxin: domain 1 of 1, from 14 to 77: score 87.2, E = 2.5e-24
*->kvvvFtkptCPYCprAAkellkklkvergdfevveidgeddgseiqd
kvvvF+k++CPYC++ A + l++++v+++ + +eid+++d +eiqd
Y34D9A.6 14 KVVVFSKSYCPYCHK-ARAALESVNVKPDALQWIEIDERKDCNEIQD 59
alakltkekeGqrTVPqifIdg<-*
+l lt G+r VP++fI+g
Y34D9A.6 60 YLGSLT----GARSVPRVFING 77