Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37A1B.2a
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Query: Y37A1B.2a CE19071 Src homology domain 3 status:Partially_confirmed TR:Q9XXG3 protein_id:CAA19486.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SH3 SH3 domain 57.4 3.9e-14 1
DUF200 Uncharacterized ACR, COG1543 2.7 4.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH3 1/1 2 59 .. 1 58 [] 57.4 3.9e-14
DUF200 1/1 35 72 .. 554 599 .] 2.7 4.9
Alignments of top-scoring domains:
SH3: domain 1 of 1, from 2 to 59: score 57.4, E = 3.9e-14
*->pkvvALYDYeaee.sdELsFkkGDvitvleksdd.gWWkgrlkgtgG
+v+A YD++ + + +ELs+ G+v+tv+ ++ d+gW +gr+ +++
Y37A1B.2a 2 AQVKAEYDFQSQPnTGELSISAGEVLTVIRENIDgGWIEGRNVRGS- 47
keGlvPsNYVepv<-*
+Gl+P +YV+p+
Y37A1B.2a 48 -VGLFPESYVTPY 59
DUF200: domain 1 of 1, from 35 to 72: score 2.7, E = 4.9
*->dagwlekvElenEvEraDnlFsPiiLtpeInfRPPEVPnYiDPlPl<
d gw e + + +lF +tp+ + RPP V P+Pl
Y37A1B.2a 35 DGGWIEGRNVR----GSVGLFPESYVTPYQASRPPPV----LPPPL 72
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Y37A1B.2a - -