Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37A1B.1
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Query: Y37A1B.1 CE19070 status:Partially_confirmed TR:Q9XTH8 protein_id:CAB05201.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SAP SAP domain 49.8 1.6e-12 1
Lysine_decarbox Lysine decarboxylase family 8.7 0.18 1
ATP-synt_ab_C ATP synthase alpha/beta chain, C term 3.6 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Lysine_decarbox 1/1 45 66 .. 1 30 [. 8.7 0.18
SAP 1/1 660 694 .. 1 35 [] 49.8 1.6e-12
ATP-synt_ab_C 1/1 1072 1116 .. 97 147 .] 3.6 8.9
Alignments of top-scoring domains:
Lysine_decarbox: domain 1 of 1, from 45 to 66: score 8.7, E = 0.18
*->MgavadGAlieaGgrikdrviGiiPnillp<-*
Mg+v+++A+ ++g v+G+ ++++
Y37A1B.1 45 MGMVNQAAF-SSQG-----VLGM--QGIMG 66
SAP: domain 1 of 1, from 660 to 694: score 49.8, E = 1.6e-12
*->lskLkVseLKeeLkkrGLstsGkKaeLieRLleal<-*
+++kV+eL+ eL+ rGL+t+G K+ L++RL++al
Y37A1B.1 660 PKSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 694
ATP-synt_ab_C: domain 1 of 1, from 1072 to 1116: score 3.6, E = 8.9
*->veetidlfyallrGklddlpedalekigtidiakykalnkellekak
v+e++ l+++l ++++++k +++++ +y+++nk+l e+
Y37A1B.1 1072 VSEQLSLIEQLRE------AKAEIDKKKKDIDSHYHKSNKKLNETSA 1112
kllk<-*
+l++
Y37A1B.1 1113 QLKS 1116