Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37D8A.23b
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Query: Y37D8A.23b CE31832 locus:unc-25 status:Partially_confirmed TN:CAD45605 protein_id:CAD45605.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse 492.6 3e-144 1
SHQ1 SHQ1 protein 2.5 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SHQ1 1/1 43 67 .. 1 29 [. 2.5 4.7
pyridoxal_deC 1/1 62 428 .. 1 399 [] 492.6 3e-144
Alignments of top-scoring domains:
SHQ1: domain 1 of 1, from 43 to 67: score 2.5, E = 4.7
*->kayleWYkdqeksnqaqllefsdEerkqL<-*
+ y++ dq +q lef+ +++q+
Y37D8A.23b 43 LKYIK---DQNDRDQ-KILEFHHPDKMQM 67
pyridoxal_deC: domain 1 of 1, from 62 to 428: score 492.6, E = 3e-144
*->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp
P+ + l +++ P+kpesll++ + +e+++ Gv+++h P+f+++ +
Y37D8A.23b 62 PDKMQMLMDLSIPEKPESLLKLVKSCEDVLRLGVRTGH-PRFFNQIS 107
agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke
g+++ s++G++L++++N+n+Ft+e++P+++++E vm + m+++
Y37D8A.23b 108 CGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVM---ARMWEAV-- 152
flgssgsqGGGvlqgggSESnLlallAARtkwlrrmkargkpldeseIlg
++ ++ +++G++++gg+++nL+a AAR+ +r k g+ +
Y37D8A.23b 153 -GWDPE-KADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIP----- 195
KLVlYtSdqaHsSvmeKaakiagVktdnlrlipsdedngkmrgddLekaI
+L ++tS+++H+S+ ++a +++g++ d + ip+d+ ngkm++++Le++I
Y37D8A.23b 196 TLCCFTSEDSHYSI-KSASAVLGIGADYCFNIPTDK-NGKMIPEALEAKI 243
eedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgietGydlWlHV
e+k++GL+Pff c T+G+Tv+gaFD+l++++ ic++ + lW HV
Y37D8A.23b 244 IECKKEGLTPFFACCTAGSTVYGAFDPLERVANICER------HKLWFHV 287
DAAyaGsAfIcPefRhplewlfGiEraDSisfnPHKwmlvlldCsalwvK
DAA++G+ +++Pe+R +l GiEra+S+++nPHK+m++ll+Csa +++
Y37D8A.23b 288 DAAWGGGMLLSPEHRY---KLAGIERANSVTWNPHKLMGALLQCSACLFR 334
dksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgnrfriLKlWfv
++++L ++++++++YL++ dk +dv+ D+++++I+++R +++ +KlW++
Y37D8A.23b 335 QDGLLFQCNQMSADYLFQQDKPYDVSFDTGDKAIQCGR--HNDVFKLWLM 382
lRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadpernlglVcF.
++s+G eg++++I++ + lA yf+ ++++++ Fe++ +V+F
Y37D8A.23b 383 WKSKGMEGYRQQINKLMDLANYFTRRIKETEG-FELII------ENVSFa 425
rlK<-*
r++
Y37D8A.23b 426 RIP 428