hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y37E11B.5
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Query:  Y37E11B.5  CE19615    status:Partially_confirmed TR:Q9TYN2 protein_id:AAD12825.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Dus      Dihydrouridine synthase (Dus)                  186.0      9e-54   1
DUF130   Domain of unknown function DUF130                3.9        3.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF130     1/1     200   213 ..   124   138 .]     3.9      3.2
Dus        1/1     207   442 ..     1   258 [.   186.0    9e-54

Alignments of top-scoring domains:
DUF130: domain 1 of 1, from 200 to 213: score 3.9, E = 3.2
                   *->GSydGKKSeLlqidw<-*
                      GS+dGKK  L +++
   Y37E11B.5   200    GSLDGKK-YLAPLTT    213

Dus: domain 1 of 1, from 207 to 442: score 186.0, E = 9e-54
                   *->llAkPMagvtDlpFRrLvreygagdLvvtEMVsakailrpekqrerm
                       lA P+++v +lpFRr +  yga+ +++ EM +a+ il ++++++++
   Y37E11B.5   207    YLA-PLTTVGNLPFRRICVDYGAD-ITCGEMALATSILSGTASEYSL 251

                   lseleeesrTsGtPlaVQLaGsdPalLaeAAklvadslgadgIDlNmGCP
                   l+ ++ e     + + VQLaG  ++++a+A ++v+++ ++d ID+NmGCP
   Y37E11B.5   252 LKRHPCE-----KIFGVQLAGGFADTMAKASQIVVENFDVDFIDINMGCP 296

                   akkvtrggaGsaLlrnpdlvarivkavvkaVkddiPVTvKiRiGwDllds
                   ++ v+ +g+G+aL   p+ + + ++a++++ ++  P TvKiR+G +  ++
   Y37E11B.5   297 IDVVNQKGGGCALPSRPQKLFEVLAATKSVLGGCCPLTVKIRTGMK--EG 344

                   henavelarraea...aGdvqalTvHGRKAWLsGlTraqryegppAdWda
                     +a+e+++    ++  +  + +T H R       +++qry+   A+Wd
   Y37E11B.5   345 VLKAPEYVEHMKKhswHT-PDLITFHPR-------SKEQRYTR-LANWDF 385

                   IkqVkqavsskeiPViaNGdItdaHFedakrcleetGaDgVMiGRGalgn
                      V +a     +P+ + GdI ++  ed  ++le+  + g+MiGRGal
   Y37E11B.5   386 TFPVQEATKP--VPLWVCGDILSW--EDYYERLEQYPVNGIMIGRGALIK 431

                   Pwlfaeihtvktge<-*
                   Pw+f   + +++++
   Y37E11B.5   432 PWIF---TEIDERR    442

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