Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37E3.11
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Query: Y37E3.11 CE26830 status:Partially_confirmed TR:Q9BKU2 protein_id:AAK27869.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CTP_transf_2 Cytidylyltransferase 156.0 1.5e-43 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CTP_transf_2 1/2 16 145 .. 1 125 [. 100.5 1.1e-27
CTP_transf_2 2/2 207 281 .. 1 83 [. 55.9 6.6e-15
Alignments of top-scoring domains:
CTP_transf_2: domain 1 of 2, from 16 to 145: score 100.5, E = 1.1e-27
*->lfgGtFDPiHnGHlrlleqAkelfdlDvrliVgvgsdppkkdkkgkK
+++G++D++H+GH+++l+qAk+ ++ +liVgv++d++ + +kg
Y37E3.11 16 WADGCYDMVHFGHANQLRQAKQFGQ---KLIVGVHNDEEIRLHKGP- 58
eGrkFpvfsaeeRlemlelaikevdpvvevdpweilredlaktkdt....
pvf+++eR++m+ ik+vd+vve +p+ +++e+l+k+ ++ +
Y37E3.11 59 -----PVFNEQERYRMVAG-IKWVDEVVENAPYATTVETLDKYDCDfcvh 102
...........dfyetvklikkltpdivlglviGaDllyslnl<-*
+++ + + +++d+y+ vk ++ +++ +++ v +Dl+++++l
Y37E3.11 103 gdditltadgkDTYQEVKDHQRYRECKRTCGVSTTDLVGRMLL 145
CTP_transf_2: domain 2 of 2, from 207 to 281: score 55.9, E = 6.6e-15
*->lfgGtFDPiHnGHlrlleqAkelfdlDvrliVgvgsdppkkdkkgkK
++ G+FD++H+GHl +le+Ake +d +liVg+ sd+ + +k
Y37E3.11 207 YVTGSFDLFHIGHLAFLEKAKEFGD---YLIVGILSDQTVNQYK--- 247
eGrkFpvfsaeeRlemlelaikevdpvvevdpweil<-*
G p++s +eR+ + ++ k v++vv +p+ei+
Y37E3.11 248 -GSNHPIMSIHERVLSVLAY-KPVNEVVFGAPYEIT 281