Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37E3.10
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Query: Y37E3.10 CE29373 status:Partially_confirmed TR:Q9BKU3 protein_id:AAK27873.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
S1 S1 RNA binding domain 55.5 9.3e-14 1
MIF4G MIF4G domain 3.9 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
S1 1/1 10 85 .. 1 79 [] 55.5 9.3e-14
MIF4G 1/1 102 157 .. 1 61 [. 3.9 5.1
Alignments of top-scoring domains:
S1: domain 1 of 1, from 10 to 85: score 55.5, E = 9.3e-14
*->kleeGdvveGtVtrvtklfGafVdlge.ngveGfvpiSeisrdkeyr
+ + ++v + V+ + + +Ga+V+l e n+ eG++ +Se+sr+ r
Y37E3.10 10 FPDVEETVVANVKMIAD-MGAYVRLSEyNDKEGMILLSELSRR---R 52
vedpsevlkvGdevkvkvlkvDkergriiLSik<-*
+++ ++ ++vG v+v++vDk++g+i+LS +
Y37E3.10 53 IRSVNKLIRVGRSESVVVIRVDKDKGYIDLSKR 85
MIF4G: domain 1 of 1, from 102 to 157: score 3.9, E = 5.1
*->ekkvkgllnkLsespenfekiikellkllmsdlrenDPennkellke
k v+++l+++ e+ + +++ +el++l+ ++ +++D +ke +k
Y37E3.10 102 AKMVNSILRHVAEQVGYTTD--EELEDLYQKTAWHFD---RKEKRKA 143
lielifekaveepn<-*
f+ka++ep+
Y37E3.10 144 ASYDAFKKAITEPT 157