Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38A8.1
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Query: Y38A8.1 CE07570 status:Partially_confirmed SW:Q23236 protein_id:AAA98017.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NUDIX NUDIX domain 65.6 5.7e-18 1
Corona_NS2 Coronavirus non-structural protein NS2 5.1 5.2 1
DUF377 Domain of unknown function (DUF377) 2.9 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Corona_NS2 1/1 64 83 .. 1 20 [. 5.1 5.2
DUF377 1/1 102 122 .. 341 363 .] 2.9 7
NUDIX 1/1 1 134 [. 3 135 .] 65.6 5.7e-18
Alignments of top-scoring domains:
Corona_NS2: domain 1 of 1, from 64 to 83: score 5.1, E = 5.2
*->MdIWlvedkyLRrirdFnVs<-*
+IW + Rr dFnV+
Y38A8.1 64 VEIWGHLKSVIRRQADFNVT 83
DUF377: domain 1 of 1, from 102 to 122: score 2.9, E = 7
*->ADtavGLAeipGdleelmnflke<-*
+D + ++++ip ++el++++
Y38A8.1 102 SDEVQAVFTIP--IDELIKKAGL 122
NUDIX: domain 1 of 1, from 1 to 134: score 65.6, E = 5.7e-18
*->ravgvvllnedg..evLLvrrsrpp...pglWelPGGgvepGEtpee
++v + l++ dg++ vLL++rs + ++++g ++PGG+++pGEt e
Y38A8.1 1 MSVLIPLVTVDGrdSVLLTKRSIHLrshRGEVCFPGGRMDPGETTTE 47
AAvREleEEtGlrvedlvvllvlllgvleypapgrd..vvhvflaellgg
+A+RE++EE+G+ + + v++ g l ++ + v+ ++ ++++
Y38A8.1 48 TALRETFEEIGVNA-----ESVEIWGHLKSVIRRQAdfNVTPIVGYISDE 92
e.epqpdpg..EvaevrWvpleellelllageirevakvlrlllal<-*
+++++ +++Ev++v+ +p++el++++ + +++ r + l
Y38A8.1 93 RvLENLVVNsdEVQAVFTIPIDELIKKAGLTK----FQSKRMKYTL 134