Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38E10A.7
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Query: Y38E10A.7 CE21587 status:Confirmed TR:Q9NAK4 protein_id:CAB54398.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lipase_2 Lipase (class 2) 259.6 4.3e-74 1
BRO1 BRO1-like domain 6.3 1.2 1
abhydrolase alpha/beta hydrolase fold 5.3 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BRO1 1/1 6 35 .. 1 30 [. 6.3 1.2
abhydrolase 1/1 135 151 .. 40 57 .. 5.3 1.2
Lipase_2 1/1 64 274 .. 1 264 [. 259.6 4.3e-74
Alignments of top-scoring domains:
BRO1: domain 1 of 1, from 6 to 35: score 6.3, E = 1.2
*->efLsipLKkTsevDlvkpLtkyIsntYgss<-*
+L+ L +T ++D+ + ++ +I++tYgs+
Y38E10A.7 6 VLLVAALLSTATADFSPSFRAFIQTTYGSA 35
abhydrolase: domain 1 of 1, from 135 to 151: score 5.3, E = 1.2
*->lekpvilvGhSmGGaial<-*
++k v+++G+SmG+ ia+
Y38E10A.7 135 QQK-VNVIGYSMGSPIAR 151
Lipase_2: domain 1 of 1, from 64 to 274: score 259.6, E = 4.3e-74
*->ndPvifvHGnSDsALktnglaatgwskllqyFleqGYtkgelYaTTw
+Pvi+vHG++ + +a+ +++ ++yF+ G +++++YaTT+
Y38E10A.7 64 RTPVILVHGTT-------N-SAGTFAPQAAYFRANGWSEETVYATTY 102
gdtntltsleraeysmkCeyVkriRkfieAVlgYTGaakVDIiahSmGvp
gd + t ++ m CeyV++iR +i+AV ++T++ kV++i++SmG+p
Y38E10A.7 103 GDAGV-TTATNVK--MLCEYVQQIRNMIIAVNAFTQQ-KVNVIGYSMGSP 148
WiaRKAIlGGkvnCvaDtnedLGppLtslVdTfvsvaGaNyGiclCalpd
iaRKAIlGG +C+ + + LG pLts ++T++svaGaN+G +lC
Y38E10A.7 149 -IARKAILGG--KCA-ENTVQLGAPLTSIIETYISVAGANRGTSLCDI-L 193
svPCratCgflfpiCvNmvnGLnPGtCpaltnglcsksplpsPccgqtky
+ ++ p+C N +nGL+ C
Y38E10A.7 194 F------APLVVPTC-NTKNGLK---C----------------------S 211
SkFLqDINaspkyEgkyvfsIwSkaDeviGPYkgrmvCGkdtseIPgsdg
S+FL+DI + yEg+y+fsI+++ D+++G ++vCG+ +s+I g++
Y38E10A.7 212 SDFLTDIRSVSAYEGQYIFSIYGPSDDKVG---FNTVCGR-VSRIDGATA 257
kkiydllnHdqvkdlTa<-*
+k + nHd+++ +T+
Y38E10A.7 258 EKDNVPGNHDAIIANTV 274