Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38F1A.3
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Query: Y38F1A.3 CE21608 locus:ptr-18 status:Partially_confirmed TR:Q9XWL9 protein_id:CAA21636.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Patched Patched family 743.7 4e-226 1
LrgA LrgA family 10.9 0.16 2
COX8 Cytochrome oxidase c subunit VIII 5.2 8.8 1
Na_H_antiporter Na+/H+ antiporter family 3.4 7.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LrgA 1/2 299 315 .. 94 110 .] 8.3 0.82
COX8 1/1 397 407 .. 11 21 .. 5.2 8.8
Na_H_antiporter 1/1 640 662 .. 274 297 .. 3.4 7.7
LrgA 2/2 693 710 .. 93 110 .] 2.4 34
Patched 1/1 5 754 .. 56 957 .] 743.7 4e-226
Alignments of top-scoring domains:
LrgA: domain 1 of 2, from 299 to 315: score 8.3, E = 0.82
*->TlivllvtGllvqllrk<-*
T++v+++t+++ +++++
Y38F1A.3 299 TFCVFISTAVIYDYIYQ 315
COX8: domain 1 of 1, from 397 to 407: score 5.2, E = 8.8
*->sameqAvGLss<-*
++me+AvGLss
Y38F1A.3 397 GVMEIAVGLSS 407
Na_H_antiporter: domain 1 of 1, from 640 to 662: score 3.4, E = 7.7
*->PwSdstilsttgLnaDGgvdHisy<-*
P+S++t+l++ g +D v Hi++
Y38F1A.3 640 PISMTTLLMAIGFSVD-FVAHITW 662
LrgA: domain 2 of 2, from 693 to 710: score 2.4, E = 34
*->STlivllvtGllvqllrk<-*
ST ++++v++l++ ++ +
Y38F1A.3 693 STMLAITVLALVHAYMVQ 710
Patched: domain 1 of 1, from 5 to 754: score 743.7, E = 4e-226
*->nsedytrpNiLdikyLnevvqvndfiltnvtipvsgalkkitlsfkd
++ +++L++ky ++ ++df++ +++ +++ ++s+ d
Y38F1A.3 5 DG-----GSLLRPKYIDKALEIEDFLQYKLKGSFGN----QSYSYSD 42
lCssfcdincpvnqhyngLdtlailrsnlhn..sridltYPtmtffgtki
+C c v+++ + + r+ +++++ +++ltYP m++fg +
Y38F1A.3 43 FCGTQCETSDAVSIFLS------MFRDQQIKktAHVKLTYPSMDVFGHRV 86
ylgpnfgGVkldpgeNdvekllDsltklklvdtkseegniksvkaivLyy
yl+ n++ Vk+ + +i+++k++ +
Y38F1A.3 87 YLANNIFQVKINN----------------------RSSIIEESKLVAINF 114
rlkrdpeeveedskeWElsledyleneyksdshievtifsdqvledElvr
++ +++e++ e+ keWE++l++y +++++ +i v++ s +++E++r
Y38F1A.3 115 HAIYNNETMYEIMKEWEQKLFAYTLSTENDP-LIRVYVTSEGLVSEEVRR 163
ngltlvPffvvgFaiLvtFsvltsvvlavrrsgslhidwvssKpiLAilg
+g+ ++P + v+F+i + F++lt+ ++ v+sKp +A lg
Y38F1A.3 164 TGILAMPLMGVTFLIILAFTILTTLKRDP----------VKSKPFEAFLG 203
vltPlmAivsAfGlLfwlGfrFnsIlcVmPFLVLGAIGVDDmFLMvhaWq
v++P+++ ++fG Lfw+Gf + +I++V PFL+L +IGVDD+F+ +haW+
Y38F1A.3 204 VICPILSLCASFGHLFWMGFEYLPIVTVVPFLIL-SIGVDDVFIFIHAWH 252
rttrslssrarKvvkkRmgevlvEaGPSItITSlTnvLSFgIGaiTptPe
rt ++s v++Rm+e+l++aGPSI+ITSlTn LSF+IG++TptP+
Y38F1A.3 253 RTPYKHS------VRDRMAETLADAGPSISITSLTNLLSFAIGIFTPTPA 296
IqlFCiytavAiffdfiYQlTFFaAilaiagkyEmkgrhslflriTakav
I FC++++ A++ d+iYQ+ FF+A+l+++g++E++ + + k+v
Y38F1A.3 297 IYTFCVFISTAVIYDYIYQIFFFSAVLVLSGEREEQRKNAYLWW---KDV 343
daaetespkklkkqrlksrgsakaaPvekegeknSkfseveeslesekss
++ e+p +g +k
Y38F1A.3 344 PLP--EEP----------TGKQK--------------------------- 354
sdssksheaeqktavvkfflniYcpfllnpkvrvcvllvyvvYlaiaiYG
+e + +v + l+ ++f++ ++ ++ ++ + + Y+ + +G
Y38F1A.3 355 ------KETIV-SRVLGKVLDFWVDFIMAKWSKFLIGAIMITYWIFMARG 397
ctnlkegLdPskLllkDSpLveilrlrekhvwpyGsqvtVvVNNPPDLtn
++ + +gL+ kL+l+DSpL++ rl ++ ++++G qv V+VNNP++ +
Y38F1A.3 398 VMEIAVGLSSEKLFLDDSPLLPLVRLQTNVIFKEGGQVAVFVNNPGNMSE 447
penrdrllemvdeFEntpyalGkWEnsTkfWLrdYekFlsssEeinleas
p + ++ ++FE +++ G+ +sT+ WL Y+ + ++
Y38F1A.3 448 PDAVPEIMRILRRFEVANNSVGA--ASTHMWLLPYLPYV---------GE 486
eledeeeeidevdpvsvvvkdkqewifydllewFlkspgfshWqgdlvwd
++ + e+ +y+ l++F k +f+ W+ ++ +
Y38F1A.3 487 QEHGSI-----------------EF-KYRYLPEFFKLTEFRRWSHFVNLG 518
n...ktdketteikkFrFttgyHgkdlstwtdRtkllkewRgvAdeypdd
n+++ ++++ ++kF+F tg +d ++w+dR ll+ wR+ A+ey +
Y38F1A.3 519 NhqdCLSEKPSCLQKFVFSTG--FHDAVSWSDRLALLENWREMASEYQH- 565
FNVTVFdedafFlDqilsilpttiQsiiwtlicMavVCflFIpnpitvfv
+N T++++ ++++Dq+l+i+p+t +++ ++licM+++ lF p+p+t+++
Y38F1A.3 566 LNLTIYEDFSMYSDQLLTIVPVTQSTVFCALICMIMILTLFTPSPVTIVT 615
itvsiaSIdiGVfGfLSLWGVdLDPisMitiIMSIGFSVDfsAHiaYhFy
+t +++SI++GVfG L ++dLDPisM t +M+IGFSVDf AHi+ h+y
Y38F1A.3 616 STAAVLSINLGVFGCLVYMNIDLDPISMTTLLMAIGFSVDFVAHITWHYY 665
rskgsesrsikkiplktpdeRvadALealGWPviQAalSTiLcvlvLlFV
+ + + ++R+++AL+ ++WP++QA++ST L++ vL++V
Y38F1A.3 666 KGDFH-----------SKRARIRHALAGIAWPMFQAGTSTMLAITVLALV 704
psYmvvvFfKTifLVVvlGlLHGLifLPilLslfvtssrifggdviirts
+Ymv+vF+K ++LV+ lG++HGL++LPi +s+++ ts
Y38F1A.3 705 HAYMVQVFVKVVVLVIFLGMFHGLVVLPIVFSALPF----------TKTS 744
nakikkpseq<-*
+ +kk + +
Y38F1A.3 745 GPQKKKVAPL 754