Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38F1A.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y38F1A.5 CE21610 locus:cyd-1 Cyclins status:Confirmed TR:Q9U2M5 protein_id:CAA21630.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
cyclin Cyclin, N-terminal domain 137.6 2.3e-37 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
cyclin 1/1 72 201 .. 1 146 [] 137.6 2.3e-37
Alignments of top-scoring domains:
cyclin: domain 1 of 1, from 72 to 201: score 137.6, E = 2.3e-37
*->diyaylrelEeeflplpppdyld.qqpqpdsiditpkmRaiLidWLv
d+ a+++++E e ++p+++y+++ q++ itp+ R ++idW++
Y38F1A.5 72 DMRAFYNCMEYEEALQPNYHYFTgVQEN-----ITPFHREQAIDWIY 113
eVhekfkLspeTLyLavnylDRFLskkkfpklkvkrkklQLvgvtclfiA
+V+++ ++ +++ Lav+++DRF+s+++ + + ++Q+++ ++lfiA
Y38F1A.5 114 DVAKEENCDGDVFLLAVSLIDRFMSVQN-----ILKHDIQMIAGVALFIA 158
sKyEEiksdvypPsvkdfvyitasDnqaytkeeilrMEkliLktLkfdls
sK+ +p++ + +y++ Dn ++ ++il++E+li tL+++ +
Y38F1A.5 159 SKLKAP----HPMTASKIAYYS--DN-SCPIDMILQWELLIVTTLQWETE 201
<-*
Y38F1A.5 - -