Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38H6C.19
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Query: Y38H6C.19 CE19113 status:Partially_confirmed TR:Q9XX41 protein_id:CAA20998.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
VOMI Vitelline membrane outer layer protein I (VO 381.0 1.2e-110 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
VOMI 1/1 13 196 .. 1 249 [] 381.0 1.2e-110
Alignments of top-scoring domains:
VOMI: domain 1 of 1, from 13 to 196: score 381.0, E = 1.2e-110
*->lailleftilqsPrvtnwGtWeewefrCpdGqfahEsiGmqvKyEtk
++i++++++lqs+rvtnwG+W+ew+ rC+dGqf+h ++++KyE++
Y38H6C.19 13 TTIIADRIELQSARVTNWGDWQEWK-RCRDGQFVH---AVNLKYEQR 55
qgsdfrgDdtGLNAirLrCnniggdsssfnkdnyIkSgeGfpwGsDIvWg
q+s gDdt+LNAi+L+C+niggd fnk+n+IkSgeG +wG+ W+
Y38H6C.19 56 QHS---GDDTALNAIALFCKNIGGD---FNKQNEIKSGEG-AWGE---WQ 95
nvkyCPnGevvvGFaLrsegprqgkgDDGTSSLSIEmDPvgAdNFaaYCG
+ ++CPn+ ++GFaL+s+ p++gkgDD vgA+NFaa+CG
Y38H6C.19 96 GDNICPNNLLIIGFALQSN-PDEGKGDD-----------VGANNFAAFCG 133
rPegpRnkkvrlawvdLnTHGSWARDQmCDVGSALANNQSPDNFIVigdt
+P+g+Rnk+++l g++
Y38H6C.19 134 PPHGARNKDIELL----------------------------------GNA 149
lqwcEHTGdWtgdqfCpkGfaVCGIqtqIEkeqgpdfgDDTgLNNVnleC
++w G+Wtgd+fCp+GfaVCGIqtqIE++qg++ gDDT+LNNVn+eC
Y38H6C.19 150 MSW----GTWTGDHFCPDGFAVCGIQTQIERSQGGN-GDDTALNNVNIEC 194
Cd<-*
C+
Y38H6C.19 195 CR 196