Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38H8A.3
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Query: Y38H8A.3 CE18365 serine\/threonine kinase status:Partially_confirmed TR:O62426 protein_id:CAA16345.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 27.4 1.7e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 17 191 .. 1 169 [. 27.4 1.7e-06
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 17 to 191: score 27.4, E = 1.7e-06
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+ + +klGeG+fG Vy++ + ++A+K+ e+i+ +
Y38H8A.3 17 WSIEKKLGEGGFGAVYRVFDA---TGKYAMKVEG-ANEQIQV--LKL 57
EiqilkrLs...HpNIvrligvfedtddhlylvmEymegGdLfdylrrng
E+++l++Ls+++ + +++ + + ++ y+vm ++++ +L d+ ++
Y38H8A.3 58 EVSVLNKLSkrgNRHFCKIEDKGRF-GNFNYVVMTLVGK-SLQDLNKAGV 105
.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden....dgt
+g++s+ + i Q l++le LH+ g +HRD+Kp N + +++ ++ +
Y38H8A.3 106 gGHMSMGCSIGIGIQSLEALEDLHNIGYLHRDVKPGNYTIGRPelneIRK 155
vKiaDFGLArlle.......sssklttfvGTpwYmmA<-*
v i DFG++r++ +++++ + + +f GT Y +
Y38H8A.3 156 VYILDFGMCRKFTgndgtirKPRQAAGFRGTVKYA-P 191