Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39A1B.3
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Query: Y39A1B.3 CE31734 locus:dpy-28 status:Partially_confirmed TR:Q9U2M1 protein_id:CAA16340.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cnd1 Non-SMC condensin subunit, XCAP-D2/Cnd1 2073.2 0 1
2-oxoacid_dh 2-oxo acid dehydrogenases acyltransferas 7.1 0.52 1
Leo1 Leo1-like protein 4.7 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Leo1 1/1 16 39 .. 354 377 .] 4.7 1.6
2-oxoacid_dh 1/1 247 264 .. 216 233 .] 7.1 0.52
Cnd1 1/1 240 1357 .. 1 1253 [] 2073.2 0
Alignments of top-scoring domains:
Leo1: domain 1 of 1, from 16 to 39: score 4.7, E = 1.6
*->ededegsdeEtrkekevkkegasr<-*
+dede+ d++ ++ +++++ ++
Y39A1B.3 16 SDEDEDMDFGSTSQQQQQQPTRNN 39
2-oxoacid_dh: domain 1 of 1, from 247 to 264: score 7.1, E = 0.52
*->rFLkevKelLEdPellll<-*
rFL +v +lLEdPe +
Y39A1B.3 247 RFLDTVVQLLEDPENMAR 264
Cnd1: domain 1 of 1, from 240 to 1357: score 2073.2, E = 0
*->sereklLqlLttlLQlnLsklwntsveeeeFiSlftkpcyrllEnlt
+e+++lL++L+t++Ql L++++n++++++++iS++ +r+l++l+
Y39A1B.3 240 MEKDFLLRFLDTVVQL-LEDPENMARSSQQWISHY----FRILKVLS 281
idylknksvrdaLfriLGvsvkrynhtlsaevsiiqlLqyfeHlsvviad
+dy+++k+v+++Lf++L++s++++++t+++++++++l+++++++s++i++
Y39A1B.3 282 ADYGMTKDVANCLFTALSHSYLEAANTFPFIEPLVTLMKENGEGSGRIYQ 331
avsLlateYgmktvaeeIIreIgqlcfndlskDtsGpKafanFLveLAer
+++ +v++++I+++g+l++++++ ++++pKaf++++++LA++
Y39A1B.3 332 PLR---------NVLQLVICRVGNLYAGERA-EKPPPKAFCMMVQSLAIN 371
vPaLmlpqltvLvedLLdgesytlRnsvlevlgdmVvsvlsdeaqnqlse
v++Lml+++t+++ +LL+++++++R+s+l++l+dm++s+++++ +l++
Y39A1B.3 372 VHDLMLQDITHVY-RLLQNQHVNVRMSTLHALADMFSSSYLSQ---SLCD 417
slksLRrltrqqlLelLlehllDvsaYVRSKVlqvfakIveekaipleff
+++s Rrl+r++++++Ll+h++D++++VRSK+++++++I+e+++ip+ef+
Y39A1B.3 418 TFAS-RRLKREGIFKRLLAHTNDEATNVRSKAVSLLRNIMENRRIPEEFE 466
qevlelavGgRLeDKSslVRknAiqLLssfLanNPFscklsseLrraeLe
+++l+++vG+RL+DKS++VRk+Aiq+L++fL+nN++++++++e+++++L+
Y39A1B.3 467 SCGLLSIVGSRLNDKSVQVRKSAIQFLTTFLDNNRHGHDFNREMHQLKLN 516
akleketqkleelrealqeerkaevalpeelwelmlpvlvEsqlnltqek
ak++++++++e++++a+q +ae+a++++l++l+++v+vE+++++++++
Y39A1B.3 517 AKCSELRNAEEPQSKAIQ---GAENAFRQNLFTLTAGVRVEVYDIFRRRY 563
reeeErlntdieiellelEsdedlvedilalerkpsykeeisLtekesed
r+e+Er++tdi+++l++++s+++lv++++a+e++p++++++sL+e++s+d
Y39A1B.3 564 RVEPERSITDILTGLFSPGSGNRLVRYYVAQENFPFRDRIPSLRERRSDD 613
fqedddfSvldeEedmeslllevvkyvvkaaeekyvtfkvqltqvddnql
+++ddd++v++e++dm+sl++evvk+vv++aee+yvtfkvqltq+dd+ql
Y39A1B.3 614 MEDDDDDTVSLEDDDMTSLVSEVVKWVVAQAEEDYVTFKVQLTQMDDDQL 663
lenepeasvrneeimklkalvqyLkdalsFakeisaaipiisqllfsknt
lene+ea++rn++im+l+a+vq+L++++s+++e+s++++i+++++++++t
Y39A1B.3 664 LENEQEARDRNNQIMQLRAQVQQLINKMSIEQELSRCVTIALRCVLNGET 713
teVqEaidFlvrckqFgIsgaelgirkMLpLVWskdksDEGtsIreaVle
+e++E+i+Fl+rck+F+I+ga+++ir+M++LVW+++++ I+++++e
Y39A1B.3 714 AEIKEGIRFLTRCKLFEITGADDAIRSMCSLVWRPSAD-----ILNELIE 758
AYkrlflsppd.ns.arekAqaivkNLskLlidasigdlasLEeilYLLA
A++++f+s++d+n++a+e+++++v+NL+k++++++++d++s+Ee++YLLA
Y39A1B.3 759 AAEDMFISRLDgNEkASERDSSTVENLMKAMNGVTEKDRPSVEEVIYLLA 808
AtelVHVDSDKNKVPRkkgeIdaaVIqkLWeiftdkskasmqkeqnvnnR
AtelVHVDSDKNKVPRk+++I+a+VI+kLW+i++d
Y39A1B.3 809 ATELVHVDSDKNKVPRKRRPIEANVINKLWMIALD--------------- 843
DslkgtskeqrrgsliiLgMlsrskpeIvgARsnLdtlidIGlGeevlkD
++++++++++++l+iL+++srs+++I++ARs+L++++++++++e+++D
Y39A1B.3 844 --MSHGINSRKIDALRILYPISRSERGIAEARSRLRVVQKKLMDPELAVD 891
lrLAryvcsaikritderntslgkskppfrlpsdhsLfkkLeelilgeif
A++++s+++++t+++n+++++s+p+f++++d+sL+k++e+l+++ei+
Y39A1B.3 892 ---ALRIISILGTPTKLENEQDAYSRPLFKIHQDDSLWKSIEKLFFYEIM 938
KADdhpdnewfDplaeqAieaiYslsekPdvlasqiASHFVYRtKRiSDF
KADd+pd++wf ++++++i++i+sls++++v+++++ASHFVYRtKRiSDF
Y39A1B.3 939 KADDNPDRDWF-GVIRLTITTILSLSMDVNVMLPKLASHFVYRTKRISDF 987
FilkclkqvfdvkEeeAivPsPDkADtetvPDsqnleindddAldetqtd
F+++c+++ ddA+d+t+++
Y39A1B.3 988 FLFYCDQV--------------------------------DDATDDTRKK 1005
seeekreketlvpvflLsrLLflvGhVAikqlVYlEkcIeKLHaelkrRk
+++++re+++l++++++++L++++G+VA+++++Y++++I+KLH+++++++
Y39A1B.3 1006 MAQRRREYWALTYCRVMEKLMAFIGEVAVQLNAYIQVTIPKLHTRYVSKM 1055
vlaEkqeaknrnqqarflsdlARLtLnmsAmevRkdlkntaqentiFtep
v+aEk++a++r++++rflsdl +k++aq++tiFt+p
Y39A1B.3 1056 VDAEKNDANIREEPVRFLSDL---------------EKSVAQRKTIFTVP 1090
ElgLvGATseDdlaelirficEreLLYvGGsvEkslLgkfaPlvveiCsn
+++++GATs+D l++l++++c+++L+ v+ ++l+g+++P+vv+ ++
Y39A1B.3 1091 QDTTPGATSND-LHHLVSVMCDKRLF-VP----NKLMGRLLPIVVY--GM 1132
pgrfqsdPdLqaaAtLALaKfMclSaeFCesnLpLLfTilEKspspiiRs
++++ +++++++aAt+A++K+M+lSae++++++p++f++++Ks+s+++R+
Y39A1B.3 1133 RCKI-MPTRIRHAATVAYGKMMPLSAEISAFAAPSFFSAMTKSSSILLRC 1181
NlvvgLgDLAvrFPNLiEpwTeyLYaRLrDesssVRkTavlvLsHLILnd
Nlv++++D+A+++P+L+E+++++L+++++Des+++R++++lvLsHL++nd
Y39A1B.3 1182 NLVAACCDFAFAQPTLFELFAQSLFRMSQDESPLARESTILVLSHLMSND 1231
MiKVKGqlsEMArcleDpdeeIsdlAklFFkELasKGsNaiYNlLPDIlS
Mi+++G+lsE+Arc++Dp+++++d+A++FFkEL+s+ +++i++lLP++l+
Y39A1B.3 1232 MIQTRGVLSEAARCICDPTRAVRDVAQSFFKELNSR-TDTIIQLLPEFLY 1280
rLSdpnlgleeeDasFktImkFLlslIkDKdkAqtesLvEKLCaRFrGvt
+LS++n++++++ s+kt+++FL++l+kDK+kA+++s+++++C++F+
Y39A1B.3 1281 HLSNGNERMSFK--SYKTVFEFLIQLLKDKPKASADSMIDRVCIKFS--- 1325
GmLvLmiYPYtCFGFnkkYiPLtstPktrterQWtPrdiaYcLslLpyne
+t++++++tP++++++L+++++n+
Y39A1B.3 1326 --------------------------NTDMNDSETPKYLLVALAKFVQND 1349
kglkKLlD<-*
+gl++L+D
Y39A1B.3 1350 GGLHRLQD 1357