hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y39B6A.35
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Query:  Y39B6A.35  CE21692    status:Partially_confirmed TR:Q9NEU3 protein_id:CAC51046.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
TGT      Queuine tRNA-ribosyltransferase                 58.2    2.7e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TGT        1/1     265   364 ..   138   229 ..    58.2  2.7e-17

Alignments of top-scoring domains:
TGT: domain 1 of 1, from 265 to 364: score 58.2, E = 2.7e-17
                   *->velGvDmFDCVaPtRyARnGtllTsr........eGtiklknakyke
                      v  G+D+FD+  P   A+ G+++   ++ ++++++++++ +n k+ +
   Y39B6A.35   265    VQQGIDLFDSSFPVKLAEEGHAFCLSddfptsskYEVVDFNNEKFAD 311

                   DfrPldeeCdCyvCknYSRaYLrHLiraeEllGarLateHNLhfyleLme
                   Df+ l   C+Cy+C++Y+++YL HL   +Ell+ +L+ +HN ++y ++ +
   Y39B6A.35   312 DFTALFDGCACYTCTKYTKGYLQHLLNTRELLASILLVIHNMTEYDKMFK 361

                   kiR<-*
                    iR
   Y39B6A.35   362 LIR    364

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