Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39B6A.30
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Query: Y39B6A.30 CE29870 status:Partially_confirmed TN:CAD31825 protein_id:CAD31825.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 252.5 5.8e-72 1
WSN Domain of unknown function 94.5 5.3e-25 1
FliL Flagellar basal body-associated protei 9.6 0.18 1
DUF540 Protein of unknown function (DUF540) 6.4 0.91 1
PCNA Proliferating cell nuclear antigen, N- 5.8 1.6 1
IL5 Interleukin 5 4.3 7 1
IF3_N Translation initiation factor IF-3, N- 4.3 5 1
Ribosomal_L25p Ribosomal L25p family 3.5 6.3 1
Gaa1 Gaa1-like, GPI transamidase component 3.3 2.3 1
STAT_bind STAT protein, DNA binding domain 2.6 5 1
Poxvirus_B22R Poxvirus B22R protein 1.5 6.1 1
2-Hacid_DH_C D-isomer specific 2-hydroxyacid dehydr 0.9 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
STAT_bind 1/1 95 103 .. 261 269 .] 2.6 5
WSN 1/1 39 107 .. 1 72 [] 94.5 5.3e-25
IL5 1/1 331 371 .. 1 41 [. 4.3 7
Poxvirus_B22R 1/1 707 738 .. 370 411 .. 1.5 6.1
DUF540 1/1 881 913 .. 202 236 .] 6.4 0.91
FliL 1/1 881 935 .. 1 68 [. 9.6 0.18
Ribosomal_L25p 1/1 1044 1059 .. 1 16 [. 3.5 6.3
PCNA 1/1 1183 1195 .. 115 127 .] 5.8 1.6
Gaa1 1/1 1210 1227 .. 529 546 .] 3.3 2.3
IF3_N 1/1 1239 1261 .. 1 23 [. 4.3 5
2-Hacid_DH_C 1/1 1335 1362 .. 22 53 .. 0.9 5.3
Y_phosphatase 1/1 1128 1363 .. 1 274 [] 252.5 5.8e-72
Alignments of top-scoring domains:
STAT_bind: domain 1 of 1, from 95 to 103: score 2.6, E = 5
*->daILdLvKk<-*
d+IL+L+Kk
Y39B6A.30 95 DKILELIKK 103
WSN: domain 1 of 1, from 39 to 107: score 94.5, E = 5.3e-25
*->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
+k +++++++ i+a+++N+I+Lqagl+ng+i++ +v++E Ln ++
Y39B6A.30 39 TKPTDYLDHITIIAHIANGITLQAGLMNGTIPINEVVGEMLN---LG 82
psqlselinvdlkkiveglngLkei<-*
++++s+lin++++ki+e +++Lke
Y39B6A.30 83 SANVSDLINYKPDKILELIKKLKEV 107
IL5: domain 1 of 1, from 331 to 371: score 4.3, E = 7
*->aveiplsalvkEtLtlLstHrtLLignetlripvPeHknHq<-*
a+e+ + + k +Ls +t+ n l++p PeH+ q
Y39B6A.30 331 ATEMDGQSIQKSLEPMLSAFQTMHAVNKKLKVPFPEHTKFQ 371
Poxvirus_B22R: domain 1 of 1, from 707 to 738: score 1.5, E = 6.1
*->vpLtekikedtlksLssYsliktsrsRrKsRPRRnAGDsRDt<-*
v +++ k+++l++L+s+ + ++ ++R+K RDt
Y39B6A.30 707 VQIDAVKKSKALEILISSLVASSVKKRKK----------RDT 738
DUF540: domain 1 of 1, from 881 to 913: score 6.4, E = 0.91
*->FylftlvPLlNLflmPvaVaGaTlhwveefkerll<-*
F lf+ +P++ ++++v V+G+ +++ ++ +e+ +
Y39B6A.30 881 FRLFVVIPVV--LILVVLVIGGIVFFWNRRREEKC 913
FliL: domain 1 of 1, from 881 to 935: score 9.6, E = 0.18
*->lklliiiillivlavglsvGvavffmmkskaedserkeaasekaaea
++l+++i+++++l+v+++ G+++f ++ +ek +e+
Y39B6A.30 881 FRLFVVIPVVLILVVLVIGGIVFFWNRRR-----------EEKCKEK 916
eaepsapekwvrpeqrdvlav<-*
eae+ +++ pe+ ++a+
Y39B6A.30 917 EAEEENEK--LIPERKRMEAI 935
Ribosomal_L25p: domain 1 of 1, from 1044 to 1059: score 3.5, E = 6.3
*->LnaevRteqgKgasRr<-*
Lna+v++ K+ +Rr
Y39B6A.30 1044 LNAKVQEKEDKSEARR 1059
PCNA: domain 1 of 1, from 1183 to 1195: score 5.8, E = 1.6
*->dlkLmliDlDsEh<-*
d+ +ml+ D+Eh
Y39B6A.30 1183 DFWMMLMQYDVEH 1195
Gaa1: domain 1 of 1, from 1210 to 1227: score 3.3, E = 2.3
*->SigflplWlliwaktfek<-*
+++++plW ++ kt+
Y39B6A.30 1210 CTDYFPLWFPFLSKTKNQ 1227
IF3_N: domain 1 of 1, from 1239 to 1261: score 4.3, E = 5
*->kkepriNeeIRareVRLIgenGe<-*
++e++ N +I++r ++++ G+
Y39B6A.30 1239 NTEYILNKKINQRTLEVVDSTGK 1261
[output cut off at A = 10 top alignments]