Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39B6A.19
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Query: Y39B6A.19 CE29861 status:Partially_confirmed TN:CAD31817 protein_id:CAD31817.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 44.8 5.8e-11 2
TPP_enzymes Thiamine pyrophosphate enzyme, central do 4.2 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPP_enzymes 1/1 36 83 .. 87 127 .. 4.2 5.7
ion_trans 1/2 108 159 .. 173 228 .] 31.0 3.2e-07
ion_trans 2/2 217 274 .. 173 228 .] 20.2 0.00028
Alignments of top-scoring domains:
TPP_enzymes: domain 1 of 1, from 36 to 83: score 4.2, E = 5.7
*->lviavGa.RFNdDrvtgkltafaknakk........riihiDiDpae
++++vGa +F r ++ l+++ +a+ + +++ ++r+i+ DiD e
Y39B6A.19 36 VYLFVGAiVF--VRIEYPLEKIEREAYLdyqnqwrdRLIQLDIDESE 80
igk<-*
i+k
Y39B6A.19 81 IDK 83
ion_trans: domain 1 of 2, from 108 to 159: score 31.0, E = 3.2e-07
*->dnfgeaflwlFqtlTteGwgdimpdtlagtvlgkiyfvifiilggfl
++fg+af+++ ++++t+G+g + p t +gk++ ++++++g+ l
Y39B6A.19 108 WTFGQAFFFAGTLISTVGYGRVSPR----TEYGKLFTILYCVIGIPL 150
llNlfiavi<-*
+l+l+ a++
Y39B6A.19 151 TLALLSAIV 159
ion_trans: domain 2 of 2, from 217 to 274: score 20.2, E = 0.00028
*->dnfgeaflwlFqtlTteGwgdimpdtl...agtvlgkiyfvifiilg
+++++af+++F++lTt+G gd p +++++ + l+ki + +++++g
Y39B6A.19 217 WSYLDAFYYCFVSLTTIGLGDFEPGDDpnqSFRGLYKIGA-TVYLMG 262
gflllNlfiavi<-*
g+ + lf+a +
Y39B6A.19 263 GLCCMMLFLATL 274