Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39G8B.1b
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Query: Y39G8B.1b CE24243 status:Predicted TR:Q9U2J6 protein_id:CAB60335.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
aldo_ket_red Aldo/keto reductase family 443.4 3.3e-130 1
A_deamin Adenosine-deaminase (editase) domain 9.9 0.052 1
Thioesterase Thioesterase domain 2.8 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
A_deamin 1/1 17 27 .. 345 355 .] 9.9 0.052
Thioesterase 1/1 41 63 .. 240 267 .] 2.8 7.6
aldo_ket_red 1/1 7 295 .. 1 369 [] 443.4 3.3e-130
Alignments of top-scoring domains:
A_deamin: domain 1 of 1, from 17 to 27: score 9.9, E = 0.052
*->GLGsWirKPpE<-*
GLG+W++KP E
Y39G8B.1b 17 GLGTWQSKPGE 27
Thioesterase: domain 1 of 1, from 41 to 63: score 2.8, E = 7.6
*->rmlpGdHFylledhveleevlehilral<-*
r++++ H y+++ +ev e++ ++l
Y39G8B.1b 41 RHIDCAHVYQNQ-----KEVGEALKEIL 63
aldo_ket_red: domain 1 of 1, from 7 to 295: score 443.4, E = 3.3e-130
*->LnnGlklkmPllGlGtwqtpgeedylwgrvdkeeakeavkaAldaGY
Ln+G+ +P++GlGtwq ++++e+++a+k+A+ aGY
Y39G8B.1b 7 LNSGY--SIPAIGLGTWQ-----------SKPGEVAAAIKTAVAAGY 40
RhiDtAaiYgNgqkPgksEeevGeaikealeegsvvvitkykRediFits
RhiD+A++Y+N +evGea+ke l+eg v kRe++Fits
Y39G8B.1b 41 RHIDCAHVYQN-------QKEVGEALKEILDEG-KV-----KREELFITS 77
gKlwntfgpDlseyghspkhvrealekSLkrLgLdYvDLyLiHwPdpfkp
K+wntf hs ++e ++ L++L+L YvDL LiHwP++
Y39G8B.1b 78 -KVWNTF--------HSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAE 118
giedkyplgfptdddgkliyedvpieetWkaleklvdeGkvrsIGVSNfs
g + +fp +++gk+ y dv+++etWka+e ++++Gk rsIG+SNf+
Y39G8B.1b 119 G--AE---LFPAGENGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSNFT 163
aeqleellsyagklklipPvvnQvElHPylqqdelrkvPLLpfCkshGIa
+ q+++ +++a ++P++ QvElHPy++q +lr+ fCk++GI+
Y39G8B.1b 164 HSQIQRVWDAA---E-VKPACLQVELHPYFTQVKLRE-----FCKEKGIV 204
vtAySPLGsglLtgkyteedlipgdsrrsllgadkgwsdlgspelledpv
v+ ySPLG ++ ++ ++ g+p++l+++v
Y39G8B.1b 205 VVGYSPLGNPG----------------------SAFFRKDGDPNVLTNEV 232
lkaiAekygykdktpAQvaLrWalqrGggpgvvvvIPKSvnpeRikeNlk
+ iA+++g ktpAQ++LrW +++G + IPKSv+p+Ri eN+
Y39G8B.1b 233 VAGIAKAHG---KTPAQIILRWFVDSG-----LSAIPKSVTPQRIIENIS 274
vfddfeLteedmkkideldrgk<-*
v+ df+L+ e++++id+ +rg
Y39G8B.1b 275 VI-DFQLSAEEIQAIDGVNRGW 295