Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y39G8B.1b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y39G8B.1b  CE24243    status:Predicted TR:Q9U2J6 protein_id:CAB60335.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
aldo_ket_red Aldo/keto reductase family                 443.4   3.3e-130   1
A_deamin     Adenosine-deaminase (editase) domain         9.9      0.052   1
Thioesterase Thioesterase domain                          2.8        7.6   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
A_deamin       1/1      17    27 ..   345   355 .]     9.9    0.052
Thioesterase   1/1      41    63 ..   240   267 .]     2.8      7.6
aldo_ket_red   1/1       7   295 ..     1   369 []   443.4 3.3e-130

Alignments of top-scoring domains:
A_deamin: domain 1 of 1, from 17 to 27: score 9.9, E = 0.052
                   *->GLGsWirKPpE<-*
                      GLG+W++KP E
   Y39G8B.1b    17    GLGTWQSKPGE    27

Thioesterase: domain 1 of 1, from 41 to 63: score 2.8, E = 7.6
                   *->rmlpGdHFylledhveleevlehilral<-*
                      r++++ H y+++     +ev e++ ++l
   Y39G8B.1b    41    RHIDCAHVYQNQ-----KEVGEALKEIL    63

aldo_ket_red: domain 1 of 1, from 7 to 295: score 443.4, E = 3.3e-130
                   *->LnnGlklkmPllGlGtwqtpgeedylwgrvdkeeakeavkaAldaGY
                      Ln+G+   +P++GlGtwq           ++++e+++a+k+A+ aGY
   Y39G8B.1b     7    LNSGY--SIPAIGLGTWQ-----------SKPGEVAAAIKTAVAAGY 40

                   RhiDtAaiYgNgqkPgksEeevGeaikealeegsvvvitkykRediFits
                   RhiD+A++Y+N        +evGea+ke l+eg  v     kRe++Fits
   Y39G8B.1b    41 RHIDCAHVYQN-------QKEVGEALKEILDEG-KV-----KREELFITS 77

                   gKlwntfgpDlseyghspkhvrealekSLkrLgLdYvDLyLiHwPdpfkp
                    K+wntf        hs   ++e ++  L++L+L YvDL LiHwP++
   Y39G8B.1b    78 -KVWNTF--------HSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAE 118

                   giedkyplgfptdddgkliyedvpieetWkaleklvdeGkvrsIGVSNfs
                   g   +   +fp +++gk+ y dv+++etWka+e ++++Gk rsIG+SNf+
   Y39G8B.1b   119 G--AE---LFPAGENGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSNFT 163

                   aeqleellsyagklklipPvvnQvElHPylqqdelrkvPLLpfCkshGIa
                   + q+++ +++a     ++P++ QvElHPy++q +lr+     fCk++GI+
   Y39G8B.1b   164 HSQIQRVWDAA---E-VKPACLQVELHPYFTQVKLRE-----FCKEKGIV 204

                   vtAySPLGsglLtgkyteedlipgdsrrsllgadkgwsdlgspelledpv
                   v+ ySPLG ++                       ++ ++ g+p++l+++v
   Y39G8B.1b   205 VVGYSPLGNPG----------------------SAFFRKDGDPNVLTNEV 232

                   lkaiAekygykdktpAQvaLrWalqrGggpgvvvvIPKSvnpeRikeNlk
                   +  iA+++g   ktpAQ++LrW +++G      + IPKSv+p+Ri eN+
   Y39G8B.1b   233 VAGIAKAHG---KTPAQIILRWFVDSG-----LSAIPKSVTPQRIIENIS 274

                   vfddfeLteedmkkideldrgk<-*
                   v+ df+L+ e++++id+ +rg
   Y39G8B.1b   275 VI-DFQLSAEEIQAIDGVNRGW    295



[DB home][top]