Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39G8C.1
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Query: Y39G8C.1 CE26838 status:Partially_confirmed TR:Q9BHK7 protein_id:CAC35856.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF251 Putative 5'-3' exonuclease domain 496.8 2.2e-157 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF251 1/1 1 242 [. 1 296 [] 496.8 2.2e-157
Alignments of top-scoring domains:
DUF251: domain 1 of 1, from 1 to 242: score 496.8, E = 2.2e-157
*->MGVPaFFRWLserYPkvIsevveekqedqipGveipvDlslPNPNgv
MGVP+F+RW serYP ++sev+ e qip
Y39G8C.1 1 MGVPKFYRWTSERYP-CLSEVINE---SQIP---------------- 27
EfDNLYLDMNGIiHpCtHpeDkpasfsfPktnaCEdemfvaiFeYiDrLf
EfDNLYLDMNGIiH+C+Hp+D++++f ++t Ede+fv iF Yi+ L+
Y39G8C.1 28 EFDNLYLDMNGIIHNCSHPNDDDVTF--RIT---EDEIFVNIFAYIENLY 72
nivkPrklLymAIDGVAPRAKMNQQRsRRFR..............aAkda
n+++P+k+++mA+DGVAPRAKMNQQR+RRF ++ ++++ +A+ a
Y39G8C.1 73 NLIRPQKVFFMAVDGVAPRAKMNQQRARRFMyveelllagkkeiwSARTA 122
eekeaeierirkeaeeeGiaipeekekkerFDSNcITPGTeFMarLakaL
+ + ++a+e+G e + ++rFDSNcITPGT FM rL++ L
Y39G8C.1 123 HTQ-------LAKALENG----EIMPSEARFDSNCITPGTYFMTRLHQKL 161
rYfIkdKlkPaftGrettdaPqnnWrnnDpsWrqkvddtaeWsnvtVIlS
+ +Ik+K ++D+ W+ + ++IlS
Y39G8C.1 162 DDWIKTKS------------------ATDSRWQ----------GRKIILS 183
daevPGEGEHKIMdYIRsqkaqPdyDPNTrHClYGlDADLIMLGLsalta
+++vPGEGEHKIMd+IR+++a+ +yDPNTrHC YGlDADLIMLG+
Y39G8C.1 184 GHNVPGEGEHKIMDFIRTERAGSSYDPNTRHCMYGLDADLIMLGI----V 229
THephFsiLREEv<-*
+HephFs+LREEv
Y39G8C.1 230 SHEPHFSLLREEV 242