Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39H10A.6
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Query: Y39H10A.6 CE26075 status:Partially_confirmed TR:Q965W8 protein_id:AAK84605.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 75.9 8.4e-20 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/3 257 295 .. 1 39 [] 30.5 7.2e-07
WD40 2/3 448 485 .. 1 39 [] 2.3 74
WD40 3/3 567 606 .. 1 39 [] 43.7 1.3e-10
Alignments of top-scoring domains:
WD40: domain 1 of 3, from 257 to 295: score 30.5, E = 7.2e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +++ ++H+ + cv+fs + g+++asg+ ++i lW+
Y39H10A.6 257 WRQTQLWdHHKFEIFCVKFSRN-GKMMASGGKSNSITLWK 295
WD40: domain 2 of 3, from 448 to 485: score 2.3, E = 74
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+t+ + ++ + ++p+ +++++ + +++lWd
Y39H10A.6 448 NLEGTTIcKEEVTIIHMTVHPS-ERLVLTTTE-LNLRLWD 485
WD40: domain 3 of 3, from 567 to 606: score 43.7, E = 1.3e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++l gH + v++va++p ++++l+s+++D ti++W+
Y39H10A.6 567 SRPRYSLvGHRGHVNAVAWNPADPTMLVSCGADATIRVWS 606