Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y40B1B.6
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Query: Y40B1B.6 CE20240 status:Partially_confirmed TR:Q9XWP6 protein_id:CAA21604.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Amino_oxidase Flavin containing amine oxidoreductase 295.6 6e-85 1
SWIRM SWIRM domain 124.5 2e-33 1
pyr_redox Pyridine nucleotide-disulphide oxidore 25.8 1.2e-06 1
TrkA-N TrkA-N domain 13.4 0.033 1
FAD_binding_3 FAD binding domain 13.1 0.0044 1
Thi4 Thi4 family 7.8 0.12 1
DAO FAD dependent oxidoreductase 6.9 0.63 1
Glyco_hydro_46 Glycosyl hydrolase family 46 6.1 1.1 1
DUF563 Protein of unknown function (DUF563) 4.8 1.6 1
DGPF DGPF domain 4.2 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SWIRM 1/1 28 126 .. 1 104 [] 124.5 2e-33
TrkA-N 1/1 136 164 .. 1 29 [. 13.4 0.033
DAO 1/1 135 166 .. 1 35 [. 6.9 0.63
DUF563 1/1 153 167 .. 271 285 .] 4.8 1.6
FAD_binding_3 1/1 137 167 .. 1 31 [. 13.1 0.0044
pyr_redox 1/1 136 169 .. 1 55 [. 25.8 1.2e-06
Thi4 1/1 137 171 .. 30 66 .. 7.8 0.12
Glyco_hydro_46 1/1 269 291 .. 1 25 [. 6.1 1.1
Amino_oxidase 1/1 144 677 .. 1 426 [] 295.6 6e-85
DGPF 1/1 733 756 .. 118 143 .] 4.2 6.4
Alignments of top-scoring domains:
SWIRM: domain 1 of 1, from 28 to 126: score 124.5, E = 2e-33
*->iaepsyaswldlsaihpiEllsepEfflgktvsgsktpevYLeyRns
+a++++a++l++++++++El+++pE++++kt + ev+L++Rns
Y40B1B.6 28 LAAAASAARLPFDRPTDHELAFFPELWEHKT-----AVEVFLLLRNS 69
iislwrlnpgryltftaarrnlagpansDvnlvsrvydFLerwGlINygi
++++w +np +++t+ ++r+n+ +p+nsD+ l+++++++L+r+GlIN+g
Y40B1B.6 70 TLATWQYNPLKECTALDVRNNVFPPFNSDLDLIQNIVHYLSRHGLINFGR 119
sskikpl<-*
+ +++++
Y40B1B.6 120 YVRSTKI 126
TrkA-N: domain 1 of 1, from 136 to 164: score 13.4, E = 0.033
*->hfiviGlGrvGrsvakeLleeGhdVvvID<-*
+iviG+G+ G+s a +L + G+dV+v +
Y40B1B.6 136 SVIVIGAGAAGISAATQLESFGFDVIVLE 164
DAO: domain 1 of 1, from 135 to 166: score 6.9, E = 0.63
*->mdvvVIGgGViGlgtAldlalrGqgtlkvalvevr<-*
v+VIG+G++G + A +l G v+ +e+r
Y40B1B.6 135 RSVIVIGAGAAGISAATQLESFG---FDVIVLEAR 166
DUF563: domain 1 of 1, from 153 to 167: score 4.8, E = 1.6
*->AEeiGFeVvVlepdk<-*
+E+ GF+V+Vle++
Y40B1B.6 153 LESFGFDVIVLEARN 167
FAD_binding_3: domain 1 of 1, from 137 to 167: score 13.1, E = 0.0044
*->VLIVGgGPaGLmlAllLaraGvrvvvvErha<-*
V+++G+G aG ++A L G +v+v+E ++
Y40B1B.6 137 VIVIGAGAAGISAATQLESFGFDVIVLEARN 167
pyr_redox: domain 1 of 1, from 136 to 169: score 25.8, E = 1.2e-06
*->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
v++IG+G+AG +AA ++ G +v++ E++
Y40B1B.6 136 SVIVIGAGAAGISAATQLES---FG---FDVIVLEAR---------- 166
TClNvgci<-*
+ci
Y40B1B.6 167 -----NCI 169
Thi4: domain 1 of 1, from 137 to 171: score 7.8, E = 0.12
*->VvIVGAGpSGLtAAYyLAkkRPglKVaiiErslSpGG<-*
V++ GAG +G +AA L g+ V+++E++ +GG
Y40B1B.6 137 VIVIGAGAAGISAATQLESF--GFDVIVLEARNCIGG 171
Glyco_hydro_46: domain 1 of 1, from 269 to 291: score 6.1, E = 1.1
*->mqLiskpENstldWkkqYgYiEdik<-*
+ L s E +tl +k+Y+ + ++
Y40B1B.6 269 ENLLSMCERGTL--IKYYNFCKSLE 291
Amino_oxidase: domain 1 of 1, from 144 to 677: score 295.6, E = 6e-85
*->laGLaAAreLlraGf.VtvlEArdRvGGRvrtvrlkggdadgfliel
aG++AA++L + Gf+V+vlEAr+ +GGR++++++k g ++e+
Y40B1B.6 144 AAGISAATQLESFGFdVIVLEARNCIGGRIHSFKSK----SGEIMET 186
Gamwflgaypnvlnlllelglelglelppft...................
G+++++ ++++++ +ll++++ ++ +++ft+ ++++ ++++ + +
Y40B1B.6 187 GGDTLRKIEDSPMATLLHQVNFEEHGVFDFTsvfvegrplneekihlfld 236
..................................................
+ ++ ++ + + +++++ ++ ++ ++ + +++ + +
Y40B1B.6 237 hyksahgalnyqahqcehrddqgsfisrqqayenllsmcergtlikyynf 286
.................................................e
++ + + ++++ + + + ++ ++ +++++ + ++ +++
Y40B1B.6 287 cksletvararehhfnqmkqlrmtalmaenqlkkmeeegnleqdpvlrrS 336
lleldlesfsdlllaggflel.........................ll.g
l ++ + s++ + + ++++e+ +++ ++ +++++ ++ +++++ +++
Y40B1B.6 337 LKRDIATSLEKFEEVADAFETadnhwqrlnehpqakqymhpgsefaTFnF 386
aleflele.sarlallslrllgledgggtfpggglllplGglpvllaaaa
+l+f+e+ +a+l+ +++ ++++++ ++ ++ +++g +ll ++
Y40B1B.6 387 MLGFEEYLvGAQLEKVQFSCDSMQNKE-NGVAAR---LTEGIAELLTQLS 432
gllggrvrlnapVrkisqegdgdsndsgaenvtvttvdGekltkgdeset
+ ++ ++rl ++V i+++g + ++ +v+ ++G+ +e+
Y40B1B.6 433 EKRKLDIRLKHRVLDIDYSGFE------HVLLKVQRENGD-------IEE 469
ieaDaVivtvPlgvlk...........flPpLpaakqeairrlgfgsvsK
++a +V++t+P+gvlk++ +++ ++f+P Lp++k+eair++g+gsv+K
Y40B1B.6 470 MKAAFVVSTLPIGVLKktiiaderaptFTPSLPDKKVEAIRNIGCGSVNK 519
vflefetpfwpengdhlfgavkgdlfgflvtdgelsrgeyvldtsktdgs
++lef++ fw +ng ++ +f+ +++++ ++++ +s ++g
Y40B1B.6 520 CILEFDRVFWTANG---------GRNQFVTVSPNIKTRGSMNIWSSVPG- 559
apewgrgvllsyvlgdgannreledlsdeelleavledLrkllgsdfedv
+ vl+ y++g+ a +++l+d+ +++ ++ L+k++g +
Y40B1B.6 560 -----SKVLCTYIVGEEA----MLELPDDVIIQNAMINLQKAFG-----N 595
pdPvtagdyrdtvvtrWstdpfprgsysyppvgad..drpalrePvgnen
+P++++ ++ +trW++d++++gs ++++ ++ ++ ++ eP++++
Y40B1B.6 596 NCPRAPI---SAHITRWHDDELAFGSGAFMSLRTEttSFDDVMEPLKTS- 641
pkdgdpglyfAGehtsgvypgtveGAveSGlraArril<-*
dg++++yfAGeht++ y +t++GA++SG raA++i
Y40B1B.6 642 --DGMSRVYFAGEHTCSSYTSTIQGAWMSGARAAADIS 677
DGPF: domain 1 of 1, from 733 to 756: score 4.2, E = 6.4
*->sdfgedvtkvlrefeepLRAELEKgk<-*
++ +e++ k ++e e++ AE EK++
Y40B1B.6 733 AQKPEEIPKIAEEIELV--AEAEKAE 756
[output cut off at A = 10 top alignments]