Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y41D4B.17
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Query: Y41D4B.17 CE21858 status:Partially_confirmed TR:Q95Y18 protein_id:AAK68467.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF274 Protein of unknown function (DUF274) 267.8 1.4e-76 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF274 1/1 35 397 .. 1 410 [] 267.8 1.4e-76
Alignments of top-scoring domains:
DUF274: domain 1 of 1, from 35 to 397: score 267.8, E = 1.4e-76
*->veapyniYVSAssDDnslLqqIkvttgdgyqsktLdqLnqnrilqnd
ve+++++Y+ ssD + L+ I+vt+++ +++LdqL + +
Y41D4B.17 35 VENGSKLYL-CSSDGPIALSKITVTSNGR--TVSLDQLLVS-----S 73
GeiqpfpvsksayItTtLsdnttkkLtGvIYvTTskQanDptFsVYvVkd
G++++ +v+++++I+T++++++t +L G+I+++T+++a+Dp+F+VY++++
Y41D4B.17 74 GFLNGWSVNSDLTISTSNTPDVTNNLGGIIFISTRQMARDPNFLVYSIQE 123
aqtisitgmknvnsTiVfLNTnlrtlepsdyDqPrksSyvsnwnQtsnss
a+++ + ++ ++T+V+LN++ ++ + +sn+ Q+ +++
Y41D4B.17 124 ANKVISRPTN-SETTLVLLNSQPNS--CR----------ISNIAQPDSTK 160
lylYaGiPaDswtqPKFqektnnqiFsNPihtdngdtnkelknftrlFFd
l++Y+GiP+++++ +q + + +iF NPi ++ n+ FFd
Y41D4B.17 161 LFIYHGIPEAGYNNSEYQATASKLIFTNPIKSWPSG-NTY-------FFD 202
nVEpfqlsLgaFYiktsggvnFkIvpnkyvidgnYtTTsvtTTGfyMkpl
++Ep+q+sL+aFYi+++g + Fk v+n++++ +nY TT++tTTGf+M++
Y41D4B.17 203 TIEPMQYSLRAFYIRAIGSIAFK-VSNQWIDPSNYETTAATTTGFLMSQE 251
vyndsTvtVNikrDtrrsGtsGanvvgylptgdgnVtvgfydgsfkyeqt
v+ s V ++ + +++G +G++v+++l ++ +nVt + + + +
Y41D4B.17 252 VSTPS-LKVDFMFNSGHNGIVGLLVSTALFAD-ANVTLCSNLECDTLRMP 299
vtpntynsqpwsiPkigaqtLtvsSTSSnslaGefYvQYFvfqGdllpit
+tp + + + + a++L v+ + G +++QYF++ dl++ +
Y41D4B.17 300 QTPAITSR-VFEWNTN-ATSLSVTPS-----QGVYFIQYFRI--DLNEQI 340
ssvtTstPpqtttTTttSkaPqatgSvsaspttTsrieTTTKssgnvkLq
+ + Ts+++++t ttS+ a +S+ +++ +eTTTK + +
Y41D4B.17 341 V-GLTSSSAAPTNSPTTSQSVTAGQSTASTTQ---YVETTTKLGLTA--S 384
lfvslvtlsmlwl<-*
+ vs+ ++++ +
Y41D4B.17 385 IAVSTMITLLHNI 397