Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y42G9A.6
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Query: Y42G9A.6 CE21867 status:Partially_confirmed TR:Q9N4Z3 protein_id:AAF60553.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 36.5 2e-09 1
PRK Phosphoribulokinase / Uridine kinase family 8.0 0.31 1
MobB Molybdopterin guanine dinucleotide synthesi 7.8 0.5 1
DUF258 Protein of unknown function, DUF258 7.7 0.32 1
Rad17 Rad17 cell cycle checkpoint protein 7.5 0.23 1
HypB_UreG HypB/UreG nucleotide-binding domain 5.6 2.5 1
ATP-bind Conserved hypothetical ATP binding protein 5.5 1.3 1
FeoB Ferrous iron transport protein B 4.6 0.94 1
Pox_A32 Poxvirus A32 protein 4.0 4.4 1
ras Ras family 3.3 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MobB 1/1 93 109 .. 1 17 [. 7.8 0.5
Pox_A32 1/1 96 109 .. 17 30 .. 4.0 4.4
DUF258 1/1 97 113 .. 33 49 .. 7.7 0.32
ABC_tran 1/1 92 113 .. 1 22 [. 36.5 2e-09
Rad17 1/1 82 114 .. 35 70 .. 7.5 0.23
ras 1/1 96 114 .. 1 21 [. 3.3 6.6
ATP-bind 1/1 94 115 .. 1 22 [. 5.5 1.3
HypB_UreG 1/1 97 115 .. 16 34 .. 5.6 2.5
PRK 1/1 94 115 .. 1 22 [. 8.0 0.31
FeoB 1/1 97 118 .. 1 22 [. 4.6 0.94
Alignments of top-scoring domains:
MobB: domain 1 of 1, from 93 to 109: score 7.8, E = 0.5
*->kIvqiVGykdSGKTTLI<-*
+ +i+G+++ GKTTL+
Y42G9A.6 93 EVTAIIGPSGAGKTTLL 109
Pox_A32: domain 1 of 1, from 96 to 109: score 4.0, E = 4.4
*->aivGgsGSGKTtyL<-*
ai+G sG GKTt+L
Y42G9A.6 96 AIIGPSGAGKTTLL 109
DUF258: domain 1 of 1, from 97 to 113: score 7.7, E = 0.32
*->faGqSGVGKSSLiNaLl<-*
++G+SG+GK +L+N+L+
Y42G9A.6 97 IIGPSGAGKTTLLNVLT 113
ABC_tran: domain 1 of 1, from 92 to 113: score 36.5, E = 2e-09
*->GevlalvGpNGaGKSTLLklis<-*
Gev+a++Gp+GaGK+TLL++++
Y42G9A.6 92 GEVTAIIGPSGAGKTTLLNVLT 113
Rad17: domain 1 of 1, from 82 to 114: score 7.5, E = 0.23
*->LkavflesqkkkklriLLLtGPsGcGKSTtvkvLaK<-*
L+ vf + +++ + + GPsG+GK+T + vL K
Y42G9A.6 82 LDSVFGVA---RPGEVTAIIGPSGAGKTTLLNVLTK 114
ras: domain 1 of 1, from 96 to 114: score 3.3, E = 6.6
*->KlVliGDsGVGKSsLliRFtd<-*
+iG sG GK++Ll+ t+
Y42G9A.6 96 --AIIGPSGAGKTTLLNVLTK 114
ATP-bind: domain 1 of 1, from 94 to 115: score 5.5, E = 1.3
*->ailViGpAGSGKSTfcgalyqh<-*
+iGp G+GK+T+ + l+++
Y42G9A.6 94 VTAIIGPSGAGKTTLLNVLTKR 115
HypB_UreG: domain 1 of 1, from 97 to 115: score 5.6, E = 2.5
*->lgGsvGSGKTtLLerliea<-*
+ G+ G+GKTtLL l+++
Y42G9A.6 97 IIGPSGAGKTTLLNVLTKR 115
PRK: domain 1 of 1, from 94 to 115: score 8.0, E = 0.31
*->vIGvaGsSGaGKTtvarrivsi<-*
v ++ G+SGaGKTt ++++
Y42G9A.6 94 VTAIIGPSGAGKTTLLNVLTKR 115
FeoB: domain 1 of 1, from 97 to 118: score 4.6, E = 0.94
*->LvGNPNVGKSTLFNALTGanqk<-*
+G+ +GK+TL+N LT+ n++
Y42G9A.6 97 IIGPSGAGKTTLLNVLTKRNLS 118
[output cut off at A = 10 top alignments]