Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y43C5B.3
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Query: Y43C5B.3 CE19158 Mitochondrial carrier proteins (2 domains) status:Partially_confirmed TR:Q9XTH0 protein_id:CAA94371.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 112.6 7.5e-30 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
mito_carr 1/4 39 130 .. 1 125 [] 51.8 9e-13
mito_carr 2/4 132 157 .. 1 26 [. -1.4 3.2e+02
mito_carr 3/4 195 244 .. 72 125 .] 25.5 1.4e-05
mito_carr 4/4 254 341 .. 1 125 [] 40.5 1.1e-09
Alignments of top-scoring domains:
mito_carr: domain 1 of 4, from 39 to 130: score 51.8, E = 9e-13
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++ + ++ ++ +t+ yPl v++ +LQ+q+++
Y43C5B.3 39 DLKLFYPSALFSSWSIRTALYPLAVLRSQLQLQKQN----------- 74
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
+ Y+++++++ i k EG + rgLY+G++ ++
Y43C5B.3 75 -----------------TVYRSTFHAYSDISKREG-F--RGLYRGFWITV 104
lrvapygaaiyFgtYEqlKklllkkkge<-*
++ + iy +++E+++ +l + +
Y43C5B.3 105 PQIGCS--FIYSTIFEKCRAVLHEQGIQ 130
mito_carr: domain 2 of 4, from 132 to 157: score -1.4, E = 3.2e+02
*->sflksllaGgiAGaiaatvtyPlDvv<-*
++ ++aGg+A ++++++ P D +
Y43C5B.3 132 VGGVAAVAGGLASFATQSIFVPTDII 157
mito_carr: domain 3 of 4, from 195 to 244: score 25.5, E = 1.4e-05
*->dcfkkivkeEGliktrgLYkGlgpnllrvapygaaiyFgtYEqlKkl
+++k i+k++G++ g+Y+G++++ + ++p+ ++ +Y ++ l
Y43C5B.3 195 SVIKAIYKTDGIL---GFYRGFWASTAVYVPQ-MLTFWPSYYWMLGL 237
llkkkge<-*
+ k +
Y43C5B.3 238 FNKVPYR 244
mito_carr: domain 4 of 4, from 254 to 341: score 40.5, E = 1.1e-09
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++ ++a+ ++G+i++++t+P+++ ++RLQ++++s+++
Y43C5B.3 254 LLFDQAVAATLGGVISTVATNPMELFRVRLQVHRGSYSK-------- 292
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
++ ++++ E + + kGl+p++
Y43C5B.3 293 -------------------------TLETMLRDEK-T--AVFTKGLTPRI 314
lrvapygaaiyFgtYEqlKklllkkkge<-*
+ ++ y +++ ++YE +K+l k + +
Y43C5B.3 315 IANSMY-SGLVVVGYEIVKRLCAKEEYK 341