Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y43C5B.3
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Query:  Y43C5B.3  CE19158   Mitochondrial carrier proteins (2 domains) status:Partially_confirmed TR:Q9XTH0 protein_id:CAA94371.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
mito_carr Mitochondrial carrier protein                 112.6    7.5e-30   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
mito_carr   1/4      39   130 ..     1   125 []    51.8    9e-13
mito_carr   2/4     132   157 ..     1    26 [.    -1.4  3.2e+02
mito_carr   3/4     195   244 ..    72   125 .]    25.5  1.4e-05
mito_carr   4/4     254   341 ..     1   125 []    40.5  1.1e-09

Alignments of top-scoring domains:
mito_carr: domain 1 of 4, from 39 to 130: score 51.8, E = 9e-13
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
                      ++   + ++ ++    +t+ yPl v++ +LQ+q+++
    Y43C5B.3    39    DLKLFYPSALFSSWSIRTALYPLAVLRSQLQLQKQN----------- 74

                   gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
                                    + Y+++++++  i k EG +  rgLY+G++ ++
    Y43C5B.3    75 -----------------TVYRSTFHAYSDISKREG-F--RGLYRGFWITV 104

                   lrvapygaaiyFgtYEqlKklllkkkge<-*
                     ++ +   iy +++E+++ +l   + +
    Y43C5B.3   105 PQIGCS--FIYSTIFEKCRAVLHEQGIQ    130

mito_carr: domain 2 of 4, from 132 to 157: score -1.4, E = 3.2e+02
                   *->sflksllaGgiAGaiaatvtyPlDvv<-*
                        ++ ++aGg+A ++++++  P D +
    Y43C5B.3   132    VGGVAAVAGGLASFATQSIFVPTDII    157

mito_carr: domain 3 of 4, from 195 to 244: score 25.5, E = 1.4e-05
                   *->dcfkkivkeEGliktrgLYkGlgpnllrvapygaaiyFgtYEqlKkl
                      +++k i+k++G++   g+Y+G++++ + ++p+    ++ +Y ++  l
    Y43C5B.3   195    SVIKAIYKTDGIL---GFYRGFWASTAVYVPQ-MLTFWPSYYWMLGL 237

                   llkkkge<-*
                   + k   +
    Y43C5B.3   238 FNKVPYR    244

mito_carr: domain 4 of 4, from 254 to 341: score 40.5, E = 1.1e-09
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
                       ++  ++a+ ++G+i++++t+P+++ ++RLQ++++s+++
    Y43C5B.3   254    LLFDQAVAATLGGVISTVATNPMELFRVRLQVHRGSYSK-------- 292

                   gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
                                            ++ ++++ E     + + kGl+p++
    Y43C5B.3   293 -------------------------TLETMLRDEK-T--AVFTKGLTPRI 314

                   lrvapygaaiyFgtYEqlKklllkkkge<-*
                   + ++ y +++  ++YE +K+l  k + +
    Y43C5B.3   315 IANSMY-SGLVVVGYEIVKRLCAKEEYK    341



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