Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y43E12A.1
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Query: Y43E12A.1 CE28122 locus:cyb-2.1 cyclin B status:Partially_confirmed TR:O45926 protein_id:CAA15975.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
cyclin Cyclin, N-terminal domain 184.9 1.3e-51 1
cyclin_C Cyclin, C-terminal domain 79.3 4.1e-20 1
CitX Apo-citrate lyase phosphoribosyl-deph 4.6 3.5 1
Glycos_transf_3 Glycosyl transferase family, a/b doma 4.3 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
cyclin 1/1 34 159 .. 1 146 [] 184.9 1.3e-51
Glycos_transf_3 1/1 234 277 .. 201 248 .. 4.3 4.8
cyclin_C 1/1 161 297 .. 1 136 [] 79.3 4.1e-20
CitX 1/1 293 310 .. 158 175 .] 4.6 3.5
Alignments of top-scoring domains:
cyclin: domain 1 of 1, from 34 to 159: score 184.9, E = 1.3e-51
*->diyaylrelEeeflplpppdyldqqpqpdsiditpkmRaiLidWLve
diy+yl + E+++ + +++ + +++kmR+iL+dWL++
Y43E12A.1 34 DIYNYLVHHEKKY--VLDDSFINGGN------VNSKMRRILVDWLIQ 72
VhekfkLspeTLyLavnylDRFLskkkfpklkvkrkklQLvgvtclfiAs
Vh +f+L+peTL+L++ lDR k+ v++ ++QL+gv++lf+As
Y43E12A.1 73 VHLRFHLTPETLHLTIFVLDRIIVKN-I----VSKAEFQLLGVAALFVAS 117
KyEEiksdvypPsvkdfvyitasDnqaytkeeilrMEkliLktLkfdls<
K+E+i y P + ++ it Dn +++k++i ME+ iL++L+fdls
Y43E12A.1 118 KFEDI----YLPDILEYEMIT--DN-TFSKKQIMAMEQTILNALNFDLS 159
-*
Y43E12A.1 - -
Glycos_transf_3: domain 1 of 1, from 234 to 277: score 4.3, E = 4.8
*->peenaelirrvLagkkegsaatldivalNaaaaLylagGaaeslk.f
p+++a +ir L+ ++ ++d++al a++a++++ +++l+ +
Y43E12A.1 234 PKTAASMIRKQLGAS---KQDIYDAIALLAQVAYKNFR--HQKLCaI 275
ke<-*
e
Y43E12A.1 276 RE 277
cyclin_C: domain 1 of 1, from 161 to 297: score 79.3, E = 4.1e-20
*->PTPysFLrrflkaaqlkdksP....vdaeeltlakyLlELslmdydf
P ++FLr+++k + ++d +P ++++ +++ +k+L EL+l+d+ +
Y43E12A.1 161 PSSLVFLRCISKTLTENDVNPidkeAFYYVHNISKCLGELALLDSVM 207
flkylPSliAAaAvylArctLnksssGnnppWtetLehytglq..Yseed
+ S +A+a++ ++++ + ++t + +q + s+ d
Y43E12A.1 208 -STVPRSHVASASMIITLNVITVDG-----INPKTAASMIRKQlgASKQD 251
lkpCvkllvelhlna.ptsklkavreKYssskfgkvssltppsssl<-*
+ + + ll+++++++ + +kl a+reKY+sskfg+vs l+++++++
Y43E12A.1 252 IYDAIALLAQVAYKNfRHQKLCAIREKYQSSKFGRVSYLMTDEILE 297
CitX: domain 1 of 1, from 293 to 310: score 4.6, E = 3.5
*->eEllekIekLlhdfdake<-*
+E+lekI + +++a+e
Y43E12A.1 293 DEILEKIHRMGRNVEASE 310