Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y43E12A.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y43E12A.1  CE28122  locus:cyb-2.1 cyclin B status:Partially_confirmed TR:O45926 protein_id:CAA15975.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
cyclin          Cyclin, N-terminal domain               184.9    1.3e-51   1
cyclin_C        Cyclin, C-terminal domain                79.3    4.1e-20   1
CitX            Apo-citrate lyase phosphoribosyl-deph     4.6        3.5   1
Glycos_transf_3 Glycosyl transferase family, a/b doma     4.3        4.8   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
cyclin            1/1      34   159 ..     1   146 []   184.9  1.3e-51
Glycos_transf_3   1/1     234   277 ..   201   248 ..     4.3      4.8
cyclin_C          1/1     161   297 ..     1   136 []    79.3  4.1e-20
CitX              1/1     293   310 ..   158   175 .]     4.6      3.5

Alignments of top-scoring domains:
cyclin: domain 1 of 1, from 34 to 159: score 184.9, E = 1.3e-51
                   *->diyaylrelEeeflplpppdyldqqpqpdsiditpkmRaiLidWLve
                      diy+yl + E+++    +  +++  +      +++kmR+iL+dWL++
   Y43E12A.1    34    DIYNYLVHHEKKY--VLDDSFINGGN------VNSKMRRILVDWLIQ 72

                   VhekfkLspeTLyLavnylDRFLskkkfpklkvkrkklQLvgvtclfiAs
                   Vh +f+L+peTL+L++  lDR   k+      v++ ++QL+gv++lf+As
   Y43E12A.1    73 VHLRFHLTPETLHLTIFVLDRIIVKN-I----VSKAEFQLLGVAALFVAS 117

                   KyEEiksdvypPsvkdfvyitasDnqaytkeeilrMEkliLktLkfdls<
                   K+E+i    y P + ++  it  Dn +++k++i  ME+ iL++L+fdls
   Y43E12A.1   118 KFEDI----YLPDILEYEMIT--DN-TFSKKQIMAMEQTILNALNFDLS  159

                   -*

   Y43E12A.1     -    -

Glycos_transf_3: domain 1 of 1, from 234 to 277: score 4.3, E = 4.8
                   *->peenaelirrvLagkkegsaatldivalNaaaaLylagGaaeslk.f
                      p+++a +ir  L+     ++ ++d++al a++a++++   +++l+ +
   Y43E12A.1   234    PKTAASMIRKQLGAS---KQDIYDAIALLAQVAYKNFR--HQKLCaI 275

                   ke<-*
                    e
   Y43E12A.1   276 RE    277

cyclin_C: domain 1 of 1, from 161 to 297: score 79.3, E = 4.1e-20
                   *->PTPysFLrrflkaaqlkdksP....vdaeeltlakyLlELslmdydf
                      P  ++FLr+++k + ++d +P ++++   +++ +k+L EL+l+d+ +
   Y43E12A.1   161    PSSLVFLRCISKTLTENDVNPidkeAFYYVHNISKCLGELALLDSVM 207

                   flkylPSliAAaAvylArctLnksssGnnppWtetLehytglq..Yseed
                       + S +A+a++   ++++  +        ++t +    +q + s+ d
   Y43E12A.1   208 -STVPRSHVASASMIITLNVITVDG-----INPKTAASMIRKQlgASKQD 251

                   lkpCvkllvelhlna.ptsklkavreKYssskfgkvssltppsssl<-*
                   + + + ll+++++++ + +kl a+reKY+sskfg+vs l+++++++
   Y43E12A.1   252 IYDAIALLAQVAYKNfRHQKLCAIREKYQSSKFGRVSYLMTDEILE    297

CitX: domain 1 of 1, from 293 to 310: score 4.6, E = 3.5
                   *->eEllekIekLlhdfdake<-*
                      +E+lekI  +  +++a+e
   Y43E12A.1   293    DEILEKIHRMGRNVEASE    310



[DB home][top]