hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y43F11A.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y43F11A.6  CE21918    status:Partially_confirmed TR:Q9U2G9 protein_id:CAB55042.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SPK      Domain of unknown function (DUF545)             32.0    1.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SPK        1/1      11    45 ..     1    39 [.    32.0  1.1e-07

Alignments of top-scoring domains:
SPK: domain 1 of 1, from 11 to 45: score 32.0, E = 1.1e-07
                   *->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFseleg<-*
                      ++ +++mdFLv+ T +a+e   P+ v +++fe F+ +++
   Y43F11A.6    11    PDVEKLMDFLVQTTGNATE---PV-VGKTIFESFRDSDK    45

[DB home][top]