Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y43F4B.4
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Query: Y43F4B.4 CE16629 WD domain, G-beta repeat (2 domains) status:Partially_confirmed TR:O45933 protein_id:CAA16333.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 67.7 1.9e-17 5
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/5 7 45 .. 1 39 [] 32.9 1.4e-07
WD40 2/5 52 92 .. 1 39 [] 27.7 4.4e-06
WD40 3/5 109 149 .. 1 39 [] 11.1 0.24
WD40 4/5 159 192 .. 1 31 [. 2.4 72
WD40 5/5 300 317 .. 22 39 .] 7.1 3.2
Alignments of top-scoring domains:
WD40: domain 1 of 5, from 7 to 45: score 32.9, E = 1.4e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +t ++H + + cv+f+p+ g+++a++ +D t +Wd
Y43F4B.4 7 VKPFQTVgAHRDLIHCVSFDPH-GRRMATCASDMTMAIWD 45
WD40: domain 2 of 5, from 52 to 92: score 27.7, E = 4.4e-06
*->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
+ a+ + H ++v+ v +++++ g+++a++S D+ti +W+
Y43F4B.4 52 WRRSAHWkCHGGAVWRVIWAHPeFGQIVATCSYDRTIVIWE 92
WD40: domain 3 of 5, from 109 to 149: score 11.1, E = 0.24
*->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
+ +++++ s vt+++fsp g ++as+ gt+++++
Y43F4B.4 109 WIRRTIIsDNRSDVTDICFSPRhLGLMMASCNVLGTVRIYE 149
WD40: domain 4 of 5, from 159 to 192: score 2.4, E = 72
*->geclatl.gHtspvtcvafspd..sgpylasgSr<-*
++++++l++ + cv +s + ++p++a gS+
Y43F4B.4 159 WNLIHELqAFHTRCGCVTWSLSrmHRPLIAVGSD 192
WD40: domain 5 of 5, from 300 to 317: score 7.1, E = 3.2
*->sgpylasgSrDgtiklWd<-*
+g+++ s S Dgt++ W+
Y43F4B.4 300 MGSVISSTSLDGTLRSWK 317