Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y43F4B.6
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Query: Y43F4B.6 CE16631 locus:klp-19 Kinesin motor domain status:Partially_confirmed TR:O45935 protein_id:CAA16335.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kinesin Kinesin motor domain 480.7 1.2e-140 1
DUF498 Protein of unknown function (DUF498) 9.5 0.015 1
RecU Recombination protein U 6.9 1.6 1
Herpes_BTRF1 Herpesvirus BTRF1 protein conserved r 5.6 1.2 1
HR1 Hr1 repeat 5.3 3.2 2
DUF683 Protein of unknown function (DUF683) 4.7 9.1 1
Sigma54_activat Sigma-54 interaction domain 3.5 4.8 1
Tektin Tektin family 3.2 3.5 1
ATP-synt_D ATP synthase subunit D 2.5 8.2 1
TGT Queuine tRNA-ribosyltransferase 2.2 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Herpes_BTRF1 1/1 29 44 .. 1 16 [. 5.6 1.2
Sigma54_activat 1/1 72 91 .. 16 35 .. 3.5 4.8
RecU 1/1 162 185 .. 146 169 .] 6.9 1.6
kinesin 1/1 44 329 .. 1 373 [] 480.7 1.2e-140
DUF683 1/1 340 354 .. 1 15 [. 4.7 9.1
HR1 1/2 317 369 .. 22 87 .] 7.4 0.78
ATP-synt_D 1/1 528 549 .. 30 51 .. 2.5 8.2
DUF498 1/1 525 561 .. 89 125 .] 9.5 0.015
TGT 1/1 602 614 .. 234 246 .] 2.2 9.1
Tektin 1/1 586 615 .. 337 366 .. 3.2 3.5
HR1 2/2 827 844 .. 1 18 [. -0.2 1.5e+02
Alignments of top-scoring domains:
Herpes_BTRF1: domain 1 of 1, from 29 to 44: score 5.6, E = 1.2
*->ipllsstKhVtINEsa<-*
++ ++tK+++INEsa
Y43F4B.6 29 VQFYENTKQIVINESA 44
Sigma54_activat: domain 1 of 1, from 72 to 91: score 3.5, E = 4.8
*->rrvArsdapVLirGESGTGK<-*
r++A ++a+VL +G +G+GK
Y43F4B.6 72 RIFAGFNATVLAYGQTGSGK 91
RecU: domain 1 of 1, from 162 to 185: score 6.9, E = 1.6
*->ekngykielgyppridYLkivdql<-*
ekn+ + l + p+id++ +++ql
Y43F4B.6 162 EKNCTVVNLTAVPVIDLKGALKQL 185
kinesin: domain 1 of 1, from 44 to 329: score 480.7, E = 1.2e-140
*->ktFtFDkVFdpestqefvyeetakPlvesvleGyNgtiFAYGQTGSG
tFtFD+VF +s+qe vye+ta Pl++ +++G+N+t++AYGQTGSG
Y43F4B.6 44 ATFTFDAVFADTSDQESVYETTALPLLDRIFAGFNATVLAYGQTGSG 90
KTYTMeGppdsdkegsgnptdsyttpeeepGiiPRaledlFerieerker
KTYTM+ e+++++ +e ++GiiPR ++ lF+ri+++++
Y43F4B.6 91 KTYTMGT------EDNVGT------DEMRRGIIPRLVSALFQRIMNTEAP 128
kgvfPklnwellnsqetligvsfdrglssdlyvndlefsvrvSylEIYNE
+f v+vS++E+Y
Y43F4B.6 129 -----------------------------------ESFAVTVSMFEVYGD 143
kirDLLspsppqagspsksnekkkkpgvpLrireDpkrGgkmdgvyVeGL
+++DLL p+ k k L+++ D+k + +V++L
Y43F4B.6 144 NVYDLLRPD-------------KVK----LNVHGDEK------NCTVVNL 170
tevpVssaeevlelLelGnknRtvasTamNerSSRSHaiFtitveqrnrd
t vpV + +l+ L +G++ Rt a+TamN+ SSRSHa+Ft+ ve + ++
Y43F4B.6 171 TAVPVIDLKGALKQLAVGCHYRTKAETAMNAMSSRSHAVFTVFVEKTATA 220
segskvtgkdnsgeesvrvskLnLVDLAGSERaskTgatGAggrRLkEga
++s +++kL LVDLAGSER++kT A+g R+kEg
Y43F4B.6 221 ------------ECDSAFSAKLQLVDLAGSERLKKTE---AEGNRMKEGI 255
nINkSLsaLGnVInALa....HiPYRDSKLTrLLqDSLGGGaNsKTlMIa
nIN L+ L +VI+ALa++++HiPYR+S+ Tr+LqDSLGG Ns T+ +a
Y43F4B.6 256 NINGGLLILSQVIAALAtkqkHIPYRNSVITRVLQDSLGG--NSFTVFLA 303
niSPsssrNntnyeETlsTLrFAsRAknIk<-*
+iSP++s n +ETl+TLr+A+RAk+Ik
Y43F4B.6 304 CISPADS----NSQETLNTLRYADRAKQIK 329
DUF683: domain 1 of 1, from 340 to 354: score 4.7, E = 9.1
*->mtdieeLkkevkKLn<-*
+++i+ L++++k+L+
Y43F4B.6 340 AEEIAILQAQLKRLQ 354
HR1: domain 1 of 2, from 317 to 369: score 7.4, E = 0.78
*->kllRltsdekLlllkketkevkrkakseaeeklvESnqklelLkqsL
++lR ++++k + k+k +++ k +++ L+ +L
Y43F4B.6 317 NTLRYADRAK---------QIKNKPIVNKNPK----AEEIAILQAQL 350
erLeelhqdsdpegesdte<-*
+rL+++++d +++ + +
Y43F4B.6 351 KRLQKENADLKQGIAPAEV 369
ATP-synt_D: domain 1 of 1, from 528 to 549: score 2.5, E = 8.2
*->eFrqlleEieelrrelgekmke<-*
e++ql+ +i el++e+++ ++e
Y43F4B.6 528 EKTQLVVRISELETEMNKLRQE 549
DUF498: domain 1 of 1, from 525 to 561: score 9.5, E = 0.015
*->lktdkeVlekpTkeAvKeyneLksaGrRvlaiiHvTC<-*
+ + k+ l+ + e++ e n+L++ G++v ++++++
Y43F4B.6 525 RESEKTQLVVRISELETEMNKLRQEGKKVTTAAKLAE 561
TGT: domain 1 of 1, from 602 to 614: score 2.2, E = 9.1
*->egsllefveeflr<-*
e++l+++++++lr
Y43F4B.6 602 EDELKNLKTQRLR 614
Tektin: domain 1 of 1, from 586 to 615: score 3.2, E = 3.5
*->eiqasiarLqqkLaeAkaslkaLenhrlrL<-*
++q++++r++++L +++ +lk L +rlrL
Y43F4B.6 586 KLQETRRRMEETLKKTEDELKNLKTQRLRL 615
[output cut off at A = 10 top alignments]