Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y46G5A.17
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Query: Y46G5A.17 CE28125 status:Confirmed TR:Q9U2F2 protein_id:CAB60359.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Carn_acyltransf Choline/Carnitine o-acyltransferase 716.1 1.6e-211 1
CDP-OH_P_transf CDP-alcohol phosphatidyltransferase 4.3 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CDP-OH_P_transf 1/1 38 88 .. 101 164 .] 4.3 5.1
Carn_acyltransf 1/1 120 716 .. 1 674 [] 716.1 1.6e-211
Alignments of top-scoring domains:
CDP-OH_P_transf: domain 1 of 1, from 38 to 88: score 4.3, E = 5.1
*->iillllllgigppnsklsglglanwllalglvlaallfilqmgviaa
iil+++ +g g l +++ +++++ +++l ++q ++
Y46G5A.17 38 IILWHYIFGDG---------YLGQSISIAVAGALLWLIFVQ----LL 71
iltlisvleyllaaykl<-*
l++ ++ley+ ++y++
Y46G5A.17 72 RLSIKTLLEYKGWMYES 88
Carn_acyltransf: domain 1 of 1, from 120 to 716: score 716.1, E = 1.6e-211
*->sLPkLPVPaLedTlkrYLeslkPllsedeelektkalvreFvepgge
+LP+LP+P L+dT+++ L s+kP+ls+ ee+++++ l +F + g+
Y46G5A.17 120 ALPRLPLPNLDDTVRKHLLSMKPILSD-EEFQELEFLSERFRK--GV 163
GekLQekLleyakktAksnkkhdNWlsewWldyaYlagrdvplpvNSsfg
G++LQ++L ++++++ +N++++wW++ Y++ r +p+++NS++
Y46G5A.17 164 GRRLQRYLTLKSWFS-------SNYVTDWWEEFVYMRQR-SPIMINSNY- 204
shvdfpkqdfpdtAyndQlrrAArlihsalsfkraldreeLPEVFHlNPk
+ f+ + +t ++Q+ rAA+l++ l f+r++dr+e+ F + P
Y46G5A.17 205 --YGFDTLNEHPT--QNQASRAANLTYTSLQFRRMVDRQEV-SPFSISP- 248
pdtakGkliflPSLSWyGAvlkgtPLCMnQYkrLFntcRvPgkprdeqDs
+++ P+C+ QY+rLFntcRvPg++ D+
Y46G5A.17 249 RTK--------------------VPFCTMQYERLFNTCRVPGEE---VDR 275
iqnyskskkegkcpeHvvVicrGqfYkldvldsrnngklltpeeleaqLa
+ + +++k H++V+crG ++kl v+++ ++ll + el+ q
Y46G5A.17 276 LLHWDDAK-------HIAVYCRGVWFKLIVHNG---KRLLEACELQVQYD 315
rIlsdssqeepkeapiGaLTsenRdeWakaRqkLlkdgpeNkesLekIes
Il +++ ++e +++LT+++R Wak R + + +g+ Nk+sL++Ie+
Y46G5A.17 316 AILAHTHEPSEGEMHLASLTAGERADWAKTRRAHFRSGV-NKTSLNDIER 364
AlFvvCLDddspedtngdnrpvteedkkctsmlsglhgggshqvGdgtNR
A+Fvv LDd+++ +++++d +s l+ ++++h G R
Y46G5A.17 365 AAFVVILDDEET--------HYDPQD---PSKLDHWAHNLLH--GKAHDR 401
WfDKsLQlIVtkNGkaGlnaEHSpaDGipvlrLmeevykvdeqilksnvn
WfDKs++lI++kNG G+n EHS++D++++ +++e ++ d+ + +++
Y46G5A.17 402 WFDKSFNLIISKNGHVGINTEHSWGDAAVMAHFTEWSLLQDIVFIGYD-- 449
eegrpvgspsardgsslplPekLeFditpelqseIekAkekfdklisdld
e+gr++g p++ +Pe+L ++i+ + I+k+ e++++li d++
Y46G5A.17 450 ENGRCKGEPKE-----KLTPERLKWEIPAPALDQIRKSMEVANALIADVE 494
lvvlqFtgfGKgfiKkcklSPDaFiQlAlQLAyYkalyGkfvpTYEsAST
+ l t++GKgf Kk k+SPDaF Q+ lQ y+k ++kf +TYE+++T
Y46G5A.17 495 MSLLVWTDYGKGFAKKLKVSPDAFLQMTLQYTYFK-NQNKFSLTYEASMT 543
RaFlhGRTETiRSvTtesleFVqaMlsekpseskeeklqLlkkAckkHvq
R F++GRTET+RS+T++s +FV +Ml+ +s + +++lqLl+kAc kH++
Y46G5A.17 544 RLFREGRTETVRSCTVQSSDFVRSMLD--ASKTPQDRLQLLRKACDKHQE 591
ytkeAstGkGvDRHLfgLkllakelgveiPfSplLleiPiFlDpkyllsn
++++A+ G+GvDRHLf+L++++++l++e+Pf + + p ylls+
Y46G5A.17 592 LYRDAMCGQGVDRHLFALYVIKRYLEEESPF----FD--NIFPPTYLLST 635
sfvlSfqtnstSedqvptetfi.....gggFGPVvdDGyGicYniqGeed
s+ + + + + +++e +++ + gggFGPV+d GyG++Y+++Ge+
Y46G5A.17 636 SQTPM-NQCEADAKGLSNEVRLrlitaGGGFGPVADRGYGVSYIVAGEDT 684
ifvhissfsScpeTdadrfakyLekaLldmrd<-*
+++hiss++S ++T++++f+++L+ +L+dm++
Y46G5A.17 685 LSFHISSKRSADNTSSREFREELKRSLNDMKK 716