Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y46G5A.17
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Query:  Y46G5A.17  CE28125    status:Confirmed TR:Q9U2F2 protein_id:CAB60359.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Carn_acyltransf Choline/Carnitine o-acyltransferase     716.1   1.6e-211   1
CDP-OH_P_transf CDP-alcohol phosphatidyltransferase       4.3        5.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
CDP-OH_P_transf   1/1      38    88 ..   101   164 .]     4.3      5.1
Carn_acyltransf   1/1     120   716 ..     1   674 []   716.1 1.6e-211

Alignments of top-scoring domains:
CDP-OH_P_transf: domain 1 of 1, from 38 to 88: score 4.3, E = 5.1
                   *->iillllllgigppnsklsglglanwllalglvlaallfilqmgviaa
                      iil+++ +g g          l +++ +++++ +++l ++q    ++
   Y46G5A.17    38    IILWHYIFGDG---------YLGQSISIAVAGALLWLIFVQ----LL 71

                   iltlisvleyllaaykl<-*
                    l++ ++ley+ ++y++
   Y46G5A.17    72 RLSIKTLLEYKGWMYES    88

Carn_acyltransf: domain 1 of 1, from 120 to 716: score 716.1, E = 1.6e-211
                   *->sLPkLPVPaLedTlkrYLeslkPllsedeelektkalvreFvepgge
                      +LP+LP+P L+dT+++ L s+kP+ls+ ee+++++ l  +F +  g+
   Y46G5A.17   120    ALPRLPLPNLDDTVRKHLLSMKPILSD-EEFQELEFLSERFRK--GV 163

                   GekLQekLleyakktAksnkkhdNWlsewWldyaYlagrdvplpvNSsfg
                   G++LQ++L ++++++       +N++++wW++  Y++ r +p+++NS++
   Y46G5A.17   164 GRRLQRYLTLKSWFS-------SNYVTDWWEEFVYMRQR-SPIMINSNY- 204

                   shvdfpkqdfpdtAyndQlrrAArlihsalsfkraldreeLPEVFHlNPk
                     + f+ +   +t  ++Q+ rAA+l++  l f+r++dr+e+   F + P
   Y46G5A.17   205 --YGFDTLNEHPT--QNQASRAANLTYTSLQFRRMVDRQEV-SPFSISP- 248

                   pdtakGkliflPSLSWyGAvlkgtPLCMnQYkrLFntcRvPgkprdeqDs
                   +++                     P+C+ QY+rLFntcRvPg++    D+
   Y46G5A.17   249 RTK--------------------VPFCTMQYERLFNTCRVPGEE---VDR 275

                   iqnyskskkegkcpeHvvVicrGqfYkldvldsrnngklltpeeleaqLa
                   + + +++k       H++V+crG ++kl v+++   ++ll + el+ q
   Y46G5A.17   276 LLHWDDAK-------HIAVYCRGVWFKLIVHNG---KRLLEACELQVQYD 315

                   rIlsdssqeepkeapiGaLTsenRdeWakaRqkLlkdgpeNkesLekIes
                    Il   +++ ++e  +++LT+++R  Wak R + + +g+ Nk+sL++Ie+
   Y46G5A.17   316 AILAHTHEPSEGEMHLASLTAGERADWAKTRRAHFRSGV-NKTSLNDIER 364

                   AlFvvCLDddspedtngdnrpvteedkkctsmlsglhgggshqvGdgtNR
                   A+Fvv LDd+++        +++++d   +s l+   ++++h  G    R
   Y46G5A.17   365 AAFVVILDDEET--------HYDPQD---PSKLDHWAHNLLH--GKAHDR 401

                   WfDKsLQlIVtkNGkaGlnaEHSpaDGipvlrLmeevykvdeqilksnvn
                   WfDKs++lI++kNG  G+n EHS++D++++ +++e ++  d+ + +++
   Y46G5A.17   402 WFDKSFNLIISKNGHVGINTEHSWGDAAVMAHFTEWSLLQDIVFIGYD-- 449

                   eegrpvgspsardgsslplPekLeFditpelqseIekAkekfdklisdld
                   e+gr++g p++       +Pe+L ++i+   +  I+k+ e++++li d++
   Y46G5A.17   450 ENGRCKGEPKE-----KLTPERLKWEIPAPALDQIRKSMEVANALIADVE 494

                   lvvlqFtgfGKgfiKkcklSPDaFiQlAlQLAyYkalyGkfvpTYEsAST
                   +  l  t++GKgf Kk k+SPDaF Q+ lQ  y+k  ++kf +TYE+++T
   Y46G5A.17   495 MSLLVWTDYGKGFAKKLKVSPDAFLQMTLQYTYFK-NQNKFSLTYEASMT 543

                   RaFlhGRTETiRSvTtesleFVqaMlsekpseskeeklqLlkkAckkHvq
                   R F++GRTET+RS+T++s +FV +Ml+  +s + +++lqLl+kAc kH++
   Y46G5A.17   544 RLFREGRTETVRSCTVQSSDFVRSMLD--ASKTPQDRLQLLRKACDKHQE 591

                   ytkeAstGkGvDRHLfgLkllakelgveiPfSplLleiPiFlDpkyllsn
                   ++++A+ G+GvDRHLf+L++++++l++e+Pf     +    + p ylls+
   Y46G5A.17   592 LYRDAMCGQGVDRHLFALYVIKRYLEEESPF----FD--NIFPPTYLLST 635

                   sfvlSfqtnstSedqvptetfi.....gggFGPVvdDGyGicYniqGeed
                   s+ +   + + +   +++e +++  + gggFGPV+d GyG++Y+++Ge+
   Y46G5A.17   636 SQTPM-NQCEADAKGLSNEVRLrlitaGGGFGPVADRGYGVSYIVAGEDT 684

                   ifvhissfsScpeTdadrfakyLekaLldmrd<-*
                   +++hiss++S ++T++++f+++L+ +L+dm++
   Y46G5A.17   685 LSFHISSKRSADNTSSREFREELKRSLNDMKK    716



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