Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y46G5A.1
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Query: Y46G5A.1 CE28983 status:Partially_confirmed TR:Q9U2D8 protein_id:CAB60374.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TBC TBC domain 117.2 4.6e-33 1
UVR UvrB/uvrC motif 9.3 0.45 1
Adeno_52K Adenoviral protein 52K 2.3 4.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TBC 1/1 509 725 .. 1 341 [] 117.2 4.6e-33
Adeno_52K 1/1 745 760 .. 344 359 .] 2.3 4.4
UVR 1/1 793 805 .. 24 36 .] 9.3 0.45
Alignments of top-scoring domains:
TBC: domain 1 of 1, from 509 to 725: score 117.2, E = 4.6e-33
*->vrqgvpsslRgkVWklllgaqelnnclltdnfkgldlfglvpvllla
+ +g+p+ lR +W llga +l +
Y46G5A.1 509 IWKGIPEKLRIVIWPRLLGAERLKH---------------------E 534
dkdeYeellnknkektvqdqneKssvgirrldyVEAVEKHPLSDDNDKTK
d+Y ell + + + +
Y46G5A.1 535 RRDVYAELLLRARLVSKD-------------------------------- 552
GSLekgsdekalklredldkIekDlsRTfpdeiffqtrlaeqqlkkdqdl
+++I++D++RT +d +f+ r +
Y46G5A.1 553 -----------------IKQIDLDINRTYRDHLAFRKR-YD--------- 575
daydkDEfddeddkneppsikqLrrlLvaYswknpqehlgYvQGMnvils
+ +k+L ++L aYs n+ +gY+QGM+ i++
Y46G5A.1 576 -----------------VKQKSLLNVLAAYSMFNTE--VGYCQGMSQIAA 606
pLLlflkhgvdldeideeqAFwclvkLm...dnylpqkyflndlsglned
++L+ l dee+AFw l Lm +++ + +f + l++
Y46G5A.1 607 LFLMYL---------DEEDAFWSLHQLMvspKHTMHG-FFVPGFPKLQRY 646
lrvLdslvkeslPeLyshlkkkenktgsgkKknllaldltllifafpwfL
+++ +k++ P++y+hl+k+ d++ i++ w
Y46G5A.1 647 EEHFKRVLKKYKPRVYKHLEKQ---------------DIPY-IYLTKWWF 680
tlFarelPleivlrIwDilftyYlgshflifvalAiLkllkskllkh<-*
+F++ +P + +lr+wD+++ + g+ +li a +i+k ++ + kh
Y46G5A.1 681 GCFLDRVPFSLALRLWDVFLVE--GDCILIAMAYNIMKMHEKNVRKH 725
Adeno_52K: domain 1 of 1, from 745 to 760: score 2.3, E = 4.4
*->sDeeyMfsLrrALesr<-*
sD+e M+sLr+ L
Y46G5A.1 745 SDDEVMHSLRETLSKL 760
UVR: domain 1 of 1, from 793 to 805: score 9.3, E = 0.45
*->AeLRDeIqaLkeq<-*
A++RDeI++++++
Y46G5A.1 793 ASIRDEIHEIQSR 805