Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y46G5A.25
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Query: Y46G5A.25 CE24297 locus:snf-4 status:Partially_confirmed TR:Q9U2E3 protein_id:CAB60368.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SNF Sodium:neurotransmitter symporter fam 348.5 7.4e-101 2
FliP FliP family 3.1 5.1 1
FTSW_RODA_SPOVE Cell cycle protein 2.9 5.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SNF 1/2 117 195 .. 7 93 .. 75.0 5.4e-20
FTSW_RODA_SPOVE 1/1 285 302 .. 366 383 .] 2.9 5.8
FliP 1/1 381 397 .. 1 17 [. 3.1 5.1
SNF 2/2 227 477 .. 226 515 .. 275.8 5.7e-79
Alignments of top-scoring domains:
SNF: domain 1 of 2, from 117 to 195: score 75.0, E = 5.4e-20
*->KldFvLSvvGfaVGLGNVWRFPYLCYKNGGGAFLiPYlIfLivaGIP
+++F+LS+ G +VGLGN+WRFP ++Y+NGG +FLiPY ++ G P
Y46G5A.25 117 QIEFLLSCLGMSVGLGNIWRFPSRAYENGGSVFLIPYITCALLFGLP 163
LFFLElaLGQytreGsitvWrkKiLDKGKGIcPlFkGiGY<-*
+LE a GQy + ++ v+r+ I P ++G+G+
Y46G5A.25 164 GVYLEFAMGQYQGRSPPFVYRR--------IMPALEGFGW 195
FTSW_RODA_SPOVE: domain 1 of 1, from 285 to 302: score 2.9, E = 5.8
*->atliliGiLlnisretkk<-*
+++i++G+L+n ++++k+
Y46G5A.25 285 SLSIGFGVLMNTASYNKQ 302
FliP: domain 1 of 1, from 381 to 397: score 3.1, E = 5.1
*->lLtvLsLlPfilimmTS<-*
lL++ +Ll+ +m+T+
Y46G5A.25 381 LLGISTLLVIVEVMCTC 397
SNF: domain 2 of 2, from 227 to 477: score 275.8, E = 5.7e-79
*->KVVYFTATFPYvvLivLLiRGVTLPGAadGIkfYL.tPdfskLldPq
K++Y+T +PY+ ivLLiRGVTL+GA dG+k+ L + d+ L + +
Y46G5A.25 227 KISYVTVILPYILIIVLLIRGVTLEGAGDGLKYFLaRTDWVALYNFK 273
VWiDAatQIFFSLGiGFGvLiAlaSYNkfhNNcYrDaiivsfiNsiTSfl
W +A+tQ +FSL+iGFGvL+ aSYNk++ c rDai++ + ++ S+
Y46G5A.25 274 TWSAALTQLCFSLSIGFGVLMNTASYNKQNHRCFRDAIFLIIGDTAMSLI 323
AGFvIFSiLGFMANIvqeqGvpHvNlSalTaDYsvYdvIseVAeseFvLg
G ++FS LG+ A e+Gv +++V ++
Y46G5A.25 324 GGAAVFSTLGYLA---RERGVT----------------VDKVVTD----- 349
LaClEDELdKVqGPGLAFiaYPeAvtmlPlSpfWavLFFlMLltLGLDSq
G++LAFiaYP A++++P++ +W++LFF+ML +LG+ +
Y46G5A.25 350 ------------GTTLAFIAYPDAMNQMPFPGLWSFLFFFMLFLLGISTL 387
FggvEgiITAlvDefprvlilkkrrelftlgvcvasfligLlmvTeGGiY
++vE+ T l D+fp +l+ +r +++gvc++ fl g +++T++GiY
Y46G5A.25 388 LVIVEVMCTCLCDKFP---RLREKRVFVVIGVCFLLFLCGVILTTDAGIY 434
vftLFDdYaAsGfsLLfvvflEciavawvYGidrFyddIkeMlG<-*
+f LFD+Y+++ f+ L+ + +ci+++++YG ++F dI +MlG
Y46G5A.25 435 WFALFDEYGSG-FGALISATSMCIIISYIYGMRNFRADIASMLG 477