Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y46G5A.30
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Query: Y46G5A.30 CE29609 locus:snf-5 status:Partially_confirmed TR:Q9U2E0 protein_id:CAB60372.4
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SNF Sodium:neurotransmitter symporter family 332.7 4.2e-96 2
Condensation Condensation domain 2.3 9.3 1
AMA-1 Apical membrane antigen 1 -1.1 3.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AMA-1 1/1 174 196 .. 1 24 [. -1.1 3.8
SNF 1/2 82 209 .. 1 135 [. 100.1 6.2e-27
Condensation 1/1 605 635 .. 293 325 .] 2.3 9.3
SNF 2/2 275 643 .. 186 593 .. 236.2 4.7e-67
Alignments of top-scoring domains:
AMA-1: domain 1 of 1, from 174 to 196: score -1.1, E = 3.8
*->MkkiYcILiLsalyLinlgNfGRG<-*
iY+I+i s + i+++N RG
Y46G5A.30 174 LVAIYYIVIVSWIS-IYMINICRG 196
SNF: domain 1 of 2, from 82 to 209: score 100.1, E = 6.2e-27
*->RetWsgKldFvLSvvGfaVGLGNVWRFPYLCYKNGGGAFLiPYlIfL
R+ +++ ++FvL++ G aVGLGN+WRFP ++Y NGG AFLiPYl +
Y46G5A.30 82 RDGFGNSFEFVLTSLGLAVGLGNIWRFPTRAYNNGGSAFLIPYLTCA 128
ivaGIPLFFLElaLGQytreGsitvWrkKiLDKGKGIcPlFkGiGYasiv
+ G P + E GQy + ++ ++r+ + P+++G+G++++
Y46G5A.30 129 FLFGLPAVYFEFLTGQYQGKSPPVIFRR--------VRPILEGVGWMGVF 170
iafyigiYYnVIiAWalyYLfsS....FTteLPWatCnnswN<-*
+a +++iYY+VI +W Y ++ +++F W++Cnn+wN
Y46G5A.30 171 VAALVAIYYIVIVSWISIYMINIcrghFAL---WSHCNNDWN 209
Condensation: domain 1 of 1, from 605 to 635: score 2.3, E = 9.3
*->tpgsGRehiipipdiermvGwFvNtlPlrvdvd<-*
+p +GR++i p++ ++ GwF + lP+ + +
Y46G5A.30 605 YPYMGRHDIY--PAVFDIFGWFLSFLPVIIVPI 635
SNF: domain 2 of 2, from 275 to 643: score 236.2, E = 4.7e-67
*->HeSsGIsdlGelrWeLtlCLllaWivvYfclwKGVksGsGKVVYFTA
+ SsG d+G+++W++ + ++W++ + + KG k GK++Y++
Y46G5A.30 275 QPSSGMLDFGGFNWPVFAAMSVCWLLTGLGILKGAKI-MGKISYVSV 320
TFPYvvLivLLiRGVTLPGAadGIkfYL.tPdfskLldPqVWiDAatQIF
++PYv +vL+i GV+ G G++ Y++tP+ kL + W +A+ Q +
Y46G5A.30 321 LVPYVLVVVLFINGVFQDGSGVGLEMYFgTPNYTKLYEQDTWTEALKQLC 370
FSLGiGFGvLiAlaSYNkfhNNcYrDaiivsfiNsiTSflAGFvIFSiLG
FSL++G G+Li l+SY + NN+ rDa+iv + + S++ G ++F+ LG
Y46G5A.30 371 FSLSVGHGGLISLSSYSPKRNNIFRDALIVIIGDTTMSLVGGGAVFATLG 420
FMANIvqeqGvpHvNlSalTaDYsvYdvIseVAeseFvLgLaClEDELdK
+ A ++G++ + +V +s
Y46G5A.30 421 YLA---KATGQD----------------VKDVVKS--------------- 436
VqGPGLAFiaYPeAvtmlPlSpfWavLFFlMLltLGLDSqFggvEgiITA
G +LAF++YPeA+t +P++ +W ++FFlML +LG + ++ v ++ +
Y46G5A.30 437 --GLSLAFVVYPEAMTRMPVPWLWCFIFFLMLFLLGASTEIALVDVFCSC 484
lvDefprvlilkkrrelftlgvcvasfligLlmvTeGGiYvftLFDdYaA
+ D +p ++++r+ +++++ c ++igL++ T++G Y+f++FD+YaA
Y46G5A.30 485 IYDQYP---RFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYWFEMFDEYAA 531
sGfsLLfvvflEciavawvYGidrFyddIkeMlGF..........rPgly
+ fs + v +E+++ +++YG ++ ddI+e +G +++ ++ + ++y
Y46G5A.30 532 G-FSSVCTVVCELLVMMYIYGFRNVRDDITEVVGHarnkftgaigAHSWY 580
wklCWkfvsPlillfif.ifslvqyGlkPltYnnvIKEAEyYvYPnWava
+ W ++sP i+l +++++++ y + ++ +YP+ +
Y46G5A.30 581 FTANWMVISPSIALILVgLSFVREY----PYMGRH------DIYPAVFDI 620
lGWlmALSSmlciPlymiyklls<-*
+GW+++ + ++ +P++m++ +++
Y46G5A.30 621 FGWFLSFLPVIIVPIFMLLNFIR 643