Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47D3A.17a
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Query: Y47D3A.17a CE26105 status:Partially_confirmed TR:Q9U2C7 protein_id:CAB57894.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Oxysterol_BP Oxysterol-binding protein 373.0 3.1e-108 1
PH PH domain 69.6 3.3e-18 1
Phage_QLRG Phage QLRG family, putative DNA packagi 8.1 0.61 1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A 5.0 0.5 1
UPF0021 PP-loop family UPF0021 4.3 4.2 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0021 1/2 72 95 .. 172 195 .. 4.6 3.6
PH 1/1 61 154 .. 1 85 [] 69.6 3.3e-18
UPF0021 2/2 250 272 .. 211 233 .] -0.4 91
DNA_topoisoIV 1/1 254 282 .. 462 492 .] 5.0 0.5
Oxysterol_BP 1/1 367 756 .. 24 440 .] 373.0 3.1e-108
Phage_QLRG 1/1 741 761 .. 97 117 .] 8.1 0.61
Alignments of top-scoring domains:
UPF0021: domain 1 of 2, from 72 to 95: score 4.6, E = 3.6
*->eyakkhkipwfeDeSNadlkYtRN<-*
+y+k ++++wf+ SNa l+Y RN
Y47D3A.17a 72 NYLKGYRQRWFVLDSNATLSYYRN 95
PH: domain 1 of 1, from 61 to 154: score 69.6, E = 3.3e-18
*->vikeGwLlkks...kswkkRyfvLfn.dvLlyykdsk...kkpkgsi
v+k GwL k+++ k++++R+fvL ++ +L+yy++ ++ +++++gsi
Y47D3A.17a 61 VEKAGWLNKWTnylKGYRQRWFVLDSnATLSYYRNPSevgHTCRGSI 107
pLsgcqvek.pdkncFeirt.drtlllqaeseeerkeWvkaiqsair<-*
+L++++v ++++ c++i+ +++t++++ +e +r++W +++++ +
Y47D3A.17a 108 NLQEARVHTdKTTSCIVISGqSQTFHVKPQNEMDRQQWTNSLEYMRH 154
UPF0021: domain 2 of 2, from 250 to 272: score -0.4, E = 91
*->pnfeqallrlaellaededlLee<-*
++ ++l +++++ +++++lL+e
Y47D3A.17a 250 EQSAKRLNKIVAVEQKEKALLQE 272
DNA_topoisoIV: domain 1 of 1, from 254 to 282: score 5.0, E = 0.5
*->aeLekiLasEseerllkiireELeeikkkfg<-*
++L+ki a e++ ++++ e+Le+++k+++
Y47D3A.17a 254 KRLNKIVA--VEQKEKALLQEQLEALAKQHS 282
Oxysterol_BP: domain 1 of 1, from 367 to 756: score 373.0, E = 3.1e-108
*->ltrRldipeeslspisLwsisqlwvGkdLskitlPvfinEpkSmLqr
+ rR+ pe ++ pi+Lwsi+++++Gk+Lski++Pv++ Ep+S Lqr
Y47D3A.17a 367 RQRRTTVPERPNLPINLWSIMKNCIGKELSKIPMPVNFSEPISVLQR 413
vtedleYpelLdkAaaredsltrWflyvaastlssysettrrvkKPlNPl
vtedleY++lL a+ l++ ++yvaa+ +s ys+t r+ KP+NPl
Y47D3A.17a 414 VTEDLEYANLLETGAKLS-TLEQ-MCYVAAYAASNYSTTCHRTNKPFNPL 461
LGEtFelkrendElpnkgqyrllsEQVSHHPPvsAffaespkskwrvqge
LGEtFe +r + + + r+ +EQVSHHPP++A++ae w++++
Y47D3A.17a 462 LGETFEFDRMD---DL--GWRSVTEQVSHHPPAAAHHAEGNG--WTMYQD 504
vqikskFlGkslavmkeGltvhtildikdingkpEtYtwtqPnttveGIL
+ +s+F+Gk+l+v + G h+ ++++ +++ + +ttv++I+
Y47D3A.17a 505 FTMTSRFRGKYLSVIPIGF-THVVFPATK-----SHFSYRKITTTVHNII 548
vGkpfvElSGdesvinsstGdkcvIeFktkGyfSGkkdsfkgrivkdpdg
vGk+++++ Gd ++n+ t kc ++F++++yfS+ +++ +iv+d g
Y47D3A.17a 549 VGKLWIDNHGDMEITNHETNEKCLLKFVPYSYFSREQPRKVYGIVRDAEG 598
nkdKEkklytlsGkWndsmyikKvqsk..segelflDahktphealkvrp
+y+ G+W+ s+ + Kv s ++ + l +t+ + +
Y47D3A.17a 599 -----IPKYVVQGTWDKSIDMLKVSSWngNHEKPKLEVDETSLKRIWT-- 641
LeeqhelesrkaWkkvadalkvgnltvftktkneleerqRpllkptesrg
++++++a+k+ + +++ l+ +++ +++++r+Rp+++++e++
Y47D3A.17a 642 ----ANPLPKNAEKMHNFTKLAIELNEPEEGVAPTDSRLRPDQRLMENGE 687
vedqralfkrledkedldkeekkekpeaddkerkqkgslyepkwfvpsgq
++++++ + e+k+ + ++ +e++++++ + k+++yep+wfv+ +
Y47D3A.17a 688 WDEANRKKLEIEEKQ-RVVRRRREAEKELAMKKGDKYEEYEPTWFVRVQD 736
pvtdKeklyikarkeyWefrKk<-*
+ l + + + yWe ++
Y47D3A.17a 737 ESN--GALIHQFKGGYWEAKEQ 756
Phage_QLRG: domain 1 of 1, from 741 to 761: score 8.1, E = 0.61
*->siIgQLRglYaeeleaedgqn<-*
++I+Q +g Y+e++e+++ +
Y47D3A.17a 741 ALIHQFKGGYWEAKEQQNWEK 761