Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47D3A.17b
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Query: Y47D3A.17b CE28126 status:Partially_confirmed TR:Q95Q23 protein_id:CAC42376.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Oxysterol_BP Oxysterol-binding protein 373.0 3.1e-108 1
Phage_QLRG Phage QLRG family, putative DNA packagi 8.1 0.61 1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A 5.0 0.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_topoisoIV 1/1 115 143 .. 462 492 .] 5.0 0.5
Oxysterol_BP 1/1 228 617 .. 24 440 .] 373.0 3.1e-108
Phage_QLRG 1/1 602 622 .. 97 117 .] 8.1 0.61
Alignments of top-scoring domains:
DNA_topoisoIV: domain 1 of 1, from 115 to 143: score 5.0, E = 0.5
*->aeLekiLasEseerllkiireELeeikkkfg<-*
++L+ki a e++ ++++ e+Le+++k+++
Y47D3A.17b 115 KRLNKIVA--VEQKEKALLQEQLEALAKQHS 143
Oxysterol_BP: domain 1 of 1, from 228 to 617: score 373.0, E = 3.1e-108
*->ltrRldipeeslspisLwsisqlwvGkdLskitlPvfinEpkSmLqr
+ rR+ pe ++ pi+Lwsi+++++Gk+Lski++Pv++ Ep+S Lqr
Y47D3A.17b 228 RQRRTTVPERPNLPINLWSIMKNCIGKELSKIPMPVNFSEPISVLQR 274
vtedleYpelLdkAaaredsltrWflyvaastlssysettrrvkKPlNPl
vtedleY++lL a+ l++ ++yvaa+ +s ys+t r+ KP+NPl
Y47D3A.17b 275 VTEDLEYANLLETGAKLS-TLEQ-MCYVAAYAASNYSTTCHRTNKPFNPL 322
LGEtFelkrendElpnkgqyrllsEQVSHHPPvsAffaespkskwrvqge
LGEtFe +r + + + r+ +EQVSHHPP++A++ae w++++
Y47D3A.17b 323 LGETFEFDRMD---DL--GWRSVTEQVSHHPPAAAHHAEGNG--WTMYQD 365
vqikskFlGkslavmkeGltvhtildikdingkpEtYtwtqPnttveGIL
+ +s+F+Gk+l+v + G h+ ++++ +++ + +ttv++I+
Y47D3A.17b 366 FTMTSRFRGKYLSVIPIGF-THVVFPATK-----SHFSYRKITTTVHNII 409
vGkpfvElSGdesvinsstGdkcvIeFktkGyfSGkkdsfkgrivkdpdg
vGk+++++ Gd ++n+ t kc ++F++++yfS+ +++ +iv+d g
Y47D3A.17b 410 VGKLWIDNHGDMEITNHETNEKCLLKFVPYSYFSREQPRKVYGIVRDAEG 459
nkdKEkklytlsGkWndsmyikKvqsk..segelflDahktphealkvrp
+y+ G+W+ s+ + Kv s ++ + l +t+ + +
Y47D3A.17b 460 -----IPKYVVQGTWDKSIDMLKVSSWngNHEKPKLEVDETSLKRIWT-- 502
LeeqhelesrkaWkkvadalkvgnltvftktkneleerqRpllkptesrg
++++++a+k+ + +++ l+ +++ +++++r+Rp+++++e++
Y47D3A.17b 503 ----ANPLPKNAEKMHNFTKLAIELNEPEEGVAPTDSRLRPDQRLMENGE 548
vedqralfkrledkedldkeekkekpeaddkerkqkgslyepkwfvpsgq
++++++ + e+k+ + ++ +e++++++ + k+++yep+wfv+ +
Y47D3A.17b 549 WDEANRKKLEIEEKQ-RVVRRRREAEKELAMKKGDKYEEYEPTWFVRVQD 597
pvtdKeklyikarkeyWefrKk<-*
+ l + + + yWe ++
Y47D3A.17b 598 ESN--GALIHQFKGGYWEAKEQ 617
Phage_QLRG: domain 1 of 1, from 602 to 622: score 8.1, E = 0.61
*->siIgQLRglYaeeleaedgqn<-*
++I+Q +g Y+e++e+++ +
Y47D3A.17b 602 ALIHQFKGGYWEAKEQQNWEK 622