Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47D3A.25
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Query: Y47D3A.25 CE24336 locus:rab-35 status:Partially_confirmed TR:Q9U2C3 protein_id:CAB57899.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ras Ras family 304.4 2.4e-89 1
DUF258 Protein of unknown function, DUF258 7.3 0.42 1
ABC_tran ABC transporter 5.6 1.8 1
arf ADP-ribosylation factor family 4.3 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_tran 1/1 12 27 .. 3 18 .. 5.6 1.8
DUF258 1/1 15 27 .. 33 45 .. 7.3 0.42
arf 1/1 47 89 .. 52 92 .. 4.3 4.2
ras 1/1 12 208 .. 1 198 [] 304.4 2.4e-89
Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 12 to 27: score 5.6, E = 1.8
*->vlalvGpNGaGKSTLL<-*
+l ++G +G GKS+LL
Y47D3A.25 12 KLLIIGDSGVGKSSLL 27
DUF258: domain 1 of 1, from 15 to 27: score 7.3, E = 0.42
*->faGqSGVGKSSLi<-*
++G SGVGKSSL+
Y47D3A.25 15 IIGDSGVGKSSLL 27
arf: domain 1 of 1, from 47 to 89: score 4.3, E = 4.2
*->FNvEtveykN..ikFtvWDvGGQeslRPlWrnYfpnTdavIfV<-*
F + t ++++++k+++WD GQe+ R +Y++ T +v+ V
Y47D3A.25 47 FKIRTMDINGqrVKLQIWDTAGQERFRTITSTYYRGTHGVVVV 89
ras: domain 1 of 1, from 12 to 208: score 304.4, E = 2.4e-89
*->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevDGkt
Kl++iGDsGVGKSsLl+RF+dn+F+e Yi+TIGvDF+++t++++G++
Y47D3A.25 12 KLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMDINGQR 58
vkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
vkLqIWDTAGQERFr++++ YYRg++G+++VYD+T+ +SF nvk+Wl+ei
Y47D3A.25 59 VKLQIWDTAGQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEI 108
lrhadkdenvpivLVGNKcDLeddedleltegqkRvVsteeGealAkelg
++ +d +v++vLVGNKc + RvV ++++++A++++
Y47D3A.25 109 ENNCD---SVQKVLVGNKCEENE----------RRVVLESDARNYAQSMN 145
AlpFmETSAKtntNVeeaFeelareilkkvse..............vnvn
+ F+ETSAK+ +NVe F+ ++ +l ++ ++++ +++++++++v+++
Y47D3A.25 146 -ISFFETSAKEDKNVEPMFTCITSLVLTAKLAnpqsaskdqsrtggVSLK 194
ldqpakkkkskCcil<-*
+++++++ k+kC +
Y47D3A.25 195 DNSGSTNQKKKCK-C 208