Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y47D9A.1a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y47D9A.1a  CE22073   mannose-1-phosphate gaunyl transferase status:Partially_confirmed TR:Q9N4V3 protein_id:AAF60647.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
NTP_transferase Nucleotidyl transferase                  52.9    5.5e-14   1
hexapep         Bacterial transferase hexapeptide (th    26.2    2.9e-05   3
GatB_N          PET112 family, N terminal region          5.2       0.98   1
CTP_transf_3    Cytidylyltransferase                      3.1        8.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
CTP_transf_3      1/1      27    54 ..    16    44 ..     3.1      8.9
NTP_transferase   1/1       4   191 ..     1   235 [.    52.9  5.5e-14
GatB_N            1/1     186   200 ..   275   289 .]     5.2     0.98
hexapep           1/3     266   283 ..     1    18 []     6.7      7.6
hexapep           2/3     284   301 ..     1    18 []    13.8     0.08
hexapep           3/3     318   335 ..     1    18 []     5.7       14

Alignments of top-scoring domains:
CTP_transf_3: domain 1 of 1, from 27 to 54: score 3.1, E = 8.9
                   *->KnLlklgGkPLiahvieaAlqSklfdkdv<-*
                      K+L +++G+PLi+h i+++ q +++ + +
   Y47D9A.1a    27    KPLFPIAGVPLIEHHIDQLCQLSGLSE-I    54

NTP_transferase: domain 1 of 1, from 4 to 191: score 52.9, E = 5.5e-14
                   *->kaiILAGG..sGTRLwPLTrtlaKplvpvlgkypmiqytlsrlanlg
                      ka++L+GG+++GTR +PL++ l+Kpl+p++g  p+i + +  l +
   Y47D9A.1a     4    KAVVLVGGpqKGTRFRPLSLQLPKPLFPIAGV-PLIEHHIDQLCQ-L 48

                   agirepivictqehrflvaeqlgdgskfglgvdGfVevtyalqpeprpag
                   +g  e i+ ++ + ++ + + + +  +        V++ y+ +p p+
   Y47D9A.1a    49 SGLSE-ILLLGFFPSDVFTDFISRCQQTY-----RVSIKYLEEPNPL--- 89

                   kkWFqGTApAvalaadflgdddsknedelvLVLggDhvigmeedfeqalq
                        GTA+ +  +   +   d    ++ v+V ++D+  +    +e++ +
   Y47D9A.1a    90 -----GTAGGLVSFKKQILAGD----PDAVFVINADVCGDL--PIEDMGA 128

                   karakaadgktvtfgivpvedptg.....YGviefdelesveegqdtevy
                   k  ++       + +++ + ++t++++ ++G +++d     +eg
   Y47D9A.1a   129 KLDSLSG-----SSMLMLTTEATRqqsinFGSVVTD-----SEG------ 162

                   rVirFvEKPdlpkAkmqVDTtLGlpeakssnyasmGlYlfnsgvf<-*
                   rVi+ v KP                    s+ +s G+Yl + +v+
   Y47D9A.1a   163 RVIHYVDKPTTFV----------------STNISCGVYLIKAEVI    191

GatB_N: domain 1 of 1, from 186 to 200: score 5.2, E = 0.98
                   *->IeyEiqRQvnllerG<-*
                      I++E++RQ++l  +G
   Y47D9A.1a   186    IKAEVIRQLDLPLNG    200

hexapep: domain 1 of 3, from 266 to 283: score 6.7, E = 7.6
                   *->gviIGdnvvIgpgvvIgd<-*
                      +v+I + ++++p ++Ig+
   Y47D9A.1a   266    DVFIDPSAKVHPTAKIGP    283

hexapep: domain 2 of 3, from 284 to 301: score 13.8, E = 0.08
                   *->gviIGdnvvIgpgvvIgd<-*
                      +v IG+ +vIg gv+I +
   Y47D9A.1a   284    NVSIGPKSVIGKGVRIKE    301

hexapep: domain 3 of 3, from 318 to 335: score 5.7, E = 14
                   *->gviIGdnvvIgpgvvIgd<-*
                       ++IG ++v+g  ++I +
   Y47D9A.1a   318    QSVIGWRSVVGMWARIEG    335



[DB home][top]