Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47G6A.10
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Query: Y47G6A.10 CE24356 ATPase status:Partially_confirmed TR:Q9N3T5 protein_id:AAF60660.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M41 Peptidase family M41 351.6 2.2e-102 2
AAA ATPase family associated with various c 303.2 1.9e-90 1
IstB IstB-like ATP binding protein 7.0 0.58 1
RNA_helicase RNA helicase 5.4 1.8 1
bZIP bZIP transcription factor 4.9 7 1
ABC_tran ABC transporter 3.8 6.2 1
Parvo_NS1 Parvovirus non-structural protein NS1 2.0 8.6 1
Tuberin Tuberin 1.3 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNA_helicase 1/1 330 343 .. 127 140 .. 5.4 1.8
IstB 1/1 330 345 .. 53 68 .. 7.0 0.58
Parvo_NS1 1/1 333 347 .. 176 194 .. 2.0 8.6
ABC_tran 1/1 331 349 .. 6 24 .. 3.8 6.2
AAA 1/1 328 519 .. 1 216 [] 303.2 1.9e-90
Tuberin 1/1 561 576 .. 766 781 .] 1.3 3.3
Peptidase_M41 1/2 525 685 .. 1 173 [. 323.5 4.1e-94
Peptidase_M41 2/2 756 799 .. 174 217 .] 23.2 1e-05
bZIP 1/1 823 847 .. 41 65 .] 4.9 7
Alignments of top-scoring domains:
RNA_helicase: domain 1 of 1, from 330 to 343: score 5.4, E = 1.8
*->ylhGaPGqGKSlla<-*
+l+G+PG+GK+lla
Y47G6A.10 330 ILTGPPGTGKTLLA 343
IstB: domain 1 of 1, from 330 to 345: score 7.0, E = 0.58
*->vLlGPpGvGKTHLAcA<-*
+L+GPpG+GKT LA A
Y47G6A.10 330 ILTGPPGTGKTLLAKA 345
Parvo_NS1: domain 1 of 1, from 333 to 347: score 2.0, E = 8.6
*->GpastGKtnlysGAAqaIa<-*
Gp++tGKt l A+a a
Y47G6A.10 333 GPPGTGKTLL----AKATA 347
ABC_tran: domain 1 of 1, from 331 to 349: score 3.8, E = 6.2
*->lvGpNGaGKSTLLklisGl<-*
l+Gp G GK+ L+k+ +G+
Y47G6A.10 331 LTGPPGTGKTLLAKATAGE 349
AAA: domain 1 of 1, from 328 to 519: score 303.2, E = 1.9e-90
*->gvLLyGPPGtGKTlLAkavAkelgvpfisisgselvskyvGesekrv
g +L GPPGtGKTlLAka A+e++vpfi +sgse+++++vG++ +rv
Y47G6A.10 328 GAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARV 374
ralfelArkslkkaaPspiiFIDEiDalapkRgd.....egdvssrvvnq
r++f++Ark+ +P+ i+FIDEiDa+++kRg++++ +++ + + ++nq
Y47G6A.10 375 RDMFSMARKN----SPC-ILFIDEIDAVGRKRGGkggmgGHSEQENTLNQ 419
LltemDLerigfekhylrgsdvvDlsnviviaaTNrpdlldpaLlrpGRf
Ll+emD gf+++ s viviaaTNr+d+ld+aLlrpGRf
Y47G6A.10 420 LLVEMD----GFTTD---------ESSVIVIAATNRVDILDSALLRPGRF 456
dreievplPdeeerleIlkihlkkmplalcqerselakdvdldelakelA
dr+i+vp+Pd+++r I+++hl +++ +l+ k v ++ lA
Y47G6A.10 457 DRQIYVPVPDIKGRASIFRVHLGPLRTSLD-------KTVLSRK----LA 495
rrtpgfsgadlaalcreAalralr<-*
++tpgfsgad+ ++c+eAal+a+r
Y47G6A.10 496 AHTPGFSGADISNVCNEAALIAAR 519
Tuberin: domain 1 of 1, from 561 to 576: score 1.3, E = 3.3
*->AHHVIAmWFirCrLpf<-*
A H IA+WF++ p+
Y47G6A.10 561 AGHAIAGWFLQHADPL 576
Peptidase_M41: domain 1 of 2, from 525 to 685: score 323.5, E = 4.1e-94
*->VtmaeleeAiDRviaGpEkKssrvisekeKrlvAYHEaGHALvGlll
++ +++e+Ai+Rv+aG+EkK + v+ ++eK++vAYHEaGHA++G++l
Y47G6A.10 525 ISNKHFEQAIERVVAGMEKK-TQVLQKEEKKTVAYHEAGHAIAGWFL 570
pgadpVhKVTIIPRGqaALGyTlflPeeDkllyLytksqLlaridvlLGG
+adp++KV+IIPRG LGy+++lP e+ yLy+k qLl+r++++LGG
Y47G6A.10 571 QHADPLLKVSIIPRGK-GLGYAQYLPKEQ---YLYSKDQLLDRMCMTLGG 616
RAAEEliFGddeVTTGAsnDLeqATkiARqMVTefGMSdklGpvaledsd
R+AEE++FG +TTGA++DL+++T++A+++V +fGMS+k+Gp+++e
Y47G6A.10 617 RVAEEIFFG--RITTGAQDDLQKVTQMAYSQVVKFGMSEKVGPLSFETPA 664
ggqvFlGrgmg.rkeySeeTadeIDeE<-*
g +m+ k+ySe+Ta++ID+E
Y47G6A.10 665 PG------EMAfDKPYSEATAQLIDQE 685
Peptidase_M41: domain 2 of 2, from 756 to 799: score 23.2, E = 1e-05
*->VrrlleeaYerAkeiLtenrdeLdaLAeaLLekETLdaeEirel<-*
Vr l+ a +r++++L e+r ++++A LLekE L +e++ el
Y47G6A.10 756 VRDLVMNALRRTRDLLLEKRSDIERVALRLLEKEILNREDMIEL 799
bZIP: domain 1 of 1, from 823 to 847: score 4.9, E = 7
*->eNkaLrkelerLkkevakLksenee<-*
eN +L k le+++ke++k k++ e+
Y47G6A.10 823 ENVELPKGLENWNKESEKKKKDEEK 847