Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y47H10A.1
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Query:  Y47H10A.1  CE24374  locus:clp-3  status:Partially_confirmed TR:Q9U2B2 protein_id:CAB60389.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Peptidase_C2 Calpain family cysteine protease           313.6    2.3e-90   1
Calpain_III  Calpain large subunit, domain III           91.0    8.6e-26   1
DUF504       Protein of unknown function (DUF504)         7.7        1.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DUF504         1/1     166   179 ..    60    75 .]     7.7      1.8
Peptidase_C2   1/1     151   447 ..     1   344 []   313.6  2.3e-90
Calpain_III    1/1     469   617 ..     1   163 []    91.0  8.6e-26

Alignments of top-scoring domains:
DUF504: domain 1 of 1, from 166 to 179: score 7.7, E = 1.8
                   *->veIrnkkdgevVWkkk<-*
                      v++r  +   +VWk++
   Y47H10A.1   166    VKVR--PKDHIVWKRP    179

Peptidase_C2: domain 1 of 1, from 151 to 447: score 313.6, E = 2.3e-90
                   *->LFeDpsFPaapkSLgykplgpassktrgieWkRPhEInenpqAYPPW
                      LFeDp+FPa+++S++ k ++       +i+WkRP E+ +np+
   Y47H10A.1   151    LFEDPQFPANNSSIYVKVRPK-----DHIVWKRPGELFANPR----- 187

                   FivgGasRtDIcQGaLGDCWLLAAiAsLtlneeLlkrVvPhdqsfqenWR
                    i    + +D+  G L + W+L+  A+L+l++eL+ rVvP dqsf+e
   Y47H10A.1   188 LIGSDKTHFDVKLGRLENRWFLSGAANLSLRDELFYRVVPPDQSFTEK-- 235

                   LYRyYaGifhfrfwqyGkWvdVvvDDlLPtkdgkVpiLlfvhsaernEFW
                       YaGifhf+fw+yG+WvdVv+DD+LPt +g    L +++s  ++EFW
   Y47H10A.1   236 ----YAGIFHFQFWRYGEWVDVVIDDRLPTVNGT---LCYMSSPGGSEFW 278

                   SALLEKAYAKlnGcYEaLYNAiLqisGGsttEAl....edlTGgvcesye
                    +LLEKAYAKl G YE+L           t+ Al + ++ +TGg + +++
   Y47H10A.1   279 GPLLEKAYAKLLGTYEHL-------NDPYTEQALwqasASFTGGLTQWFD 321

                   LkkapspmpSetdLnLlniikkalergsnslLrDsDLvrflllgcs.idi
                   +  a            l +i + ++ gs             l+ c +id+
   Y47H10A.1   322 IFMADE-------MAVLAMIMRGVQMGS-------------LIVCLnIDV 351

                   tspvdmEakmakGLvkgHAYSVTgvkevnyrGekqkLiRlRNPWGdevEW
                   +   +   ++ +GL+kg  Y +Tgv   +   ek++LiR+R PWG  v W
   Y47H10A.1   352 N---EKGVRQKNGLIKGYGYCITGVNLMETEWEKAPLIRIRSPWG-KVKW 397

                   tGdWsDsspdWreidedekarlqlkfeeDGeFWmSfeDFlnhFsrlEICn
                   +Gd +  s  W   d++ ++  + k e DGeFWmS+ DF+ +F+ +  Cn
   Y47H10A.1   398 KGDFCYRSHRWFGLDKEKRESFRIK-E-DGEFWMSLKDFMVEFTDVYCCN 445

                   Lt<-*
                   L+
   Y47H10A.1   446 LS    447

Calpain_III: domain 1 of 1, from 469 to 617: score 91.0, E = 8.6e-26
                   *->kWelaiveGeW..tRgedpsdstAGGCrNypdTFwtNPQYiitLeep
                       W  a++eGeW+++ g      tAGGC  + dTF+tN QY i+
   Y47H10A.1   469    QWIQASFEGEWssRIG------TAGGCDDH-DTFCTNLQYEIHFRAT 508

                   DeddddedsevgCSvLvaLmQKdrRreRrmGedmltIGFavYeVpdelng
                   D    d   +  C+ + aL QK+r     +G ++  IG  vYe p    g
   Y47H10A.1   509 DSY--DSNHK--CTIIAALFQKNRDHCVYKGLELFLIGLLVYEMP----G 550

                   qtnvhlsrdffltnqsrarSstFINlREVslRfrLPpGeYvvVPSTFEPn
                    +n       +    ++a S+ F ++RE   Rf +P G+Yv+VPST++P
   Y47H10A.1   551 -PNEKVTPEMVKSQTPIADSKLFKDSREANIRFTVPLGHYVIVPSTYDPD 599

                   eegeFiLRVFSEkkante<-*
                   ++geF+LR+F+++  +
   Y47H10A.1   600 QDGEFLLRIFTNVDFDKT    617



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