Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47H9C.2
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Query: Y47H9C.2 CE20263 status:Partially_confirmed TR:Q9XWD7 protein_id:CAA21738.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-DHHC DHHC zinc finger domain 114.3 5.4e-31 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-DHHC 1/1 155 219 .. 1 66 [] 114.3 5.4e-31
Alignments of top-scoring domains:
zf-DHHC: domain 1 of 1, from 155 to 219: score 114.3, E = 5.4e-31
*->ldngkfgeikfCskCnsyKVPpRShHCsvCnkCVlrmDHHCpWinnC
++ng + + k+C++C+ y+ PpR++HC C+ CVl++DHHCpW++nC
Y47H9C.2 155 VVNGEHVKMKYCTTCRLYR-PPRCSHCAICDNCVLMFDHHCPWVGNC 200
VGlrNykyFllFlaylsll<-*
+GlrNy yF++F+++ls+l
Y47H9C.2 201 IGLRNYTYFYRFVFCLSIL 219