Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48A5A.1
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Query: Y48A5A.1 CE25308 status:Partially_confirmed TR:Q9TYM6 protein_id:AAD12829.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SHQ1 SHQ1 protein 404.8 3.1e-132 1
Peptidase_C48 Ulp1 protease family, C-terminal cataly 160.9 2.2e-44 1
TB2_DP1_HVA22 TB2/DP1, HVA22 family 7.0 1.4 1
DUF355 Protein of unknown function (DUF355) 1.8 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C48 1/1 14 208 .. 1 246 [] 160.9 2.2e-44
DUF355 1/1 378 388 .. 1 12 [. 1.8 8.8
TB2_DP1_HVA22 1/1 496 529 .. 1 34 [. 7.0 1.4
SHQ1 1/1 420 612 .. 1 230 [] 404.8 3.1e-132
Alignments of top-scoring domains:
Peptidase_C48: domain 1 of 1, from 14 to 208: score 160.9, E = 2.2e-44
*->gisittrdlktltkgewLnDtiidfylrylaerllpdPilkekstaa
++ +++ ++++ g+w+nD + f+ ++l+++ s+aa
Y48A5A.1 14 VVLTADDVTILEHTGCWFNDKLLTFCAEFLEQHN---------SAAA 51
lthffnsFfytklksrfkdgdekdelykdvkrgtar.nektkkkdlfdkD
++++f++ ++ +++++++d+ +d+ +g+++ n+k++++++ +
Y48A5A.1 52 EIQIFTPPQTEMIRHSTCDE------EVDMYFGCLDvNSKDLIAFIVNDN 95
iiyvPinedgkkvHWvllvidlpdkkkkdqstivylDSlislnrekavdt
++ +n ++ HW+ll++d++ ++ ++DS +++n + a +
Y48A5A.1 96 QDVTRVNGGS---HWSLLIFDRKID------KFRHFDSARGHNLKIAEN- 135
italikplsdelkylkrqrlslkksfdkkdwdlqpfeikrlpmkvPQQpn
l+++ + ++ ++ +q ++ p+ ++QQ+n
Y48A5A.1 136 ---LMQKSRKLVRQRQSQ-------------------RNLEPELCLQQKN 163
gsDCGiyvlkfiellaegppqdfmttiedkllkdvdnfrkklakeiyeeg
+sDCG++v +++ +lae+++ d + ++e+ +d+ r ++ ++i+ ++
Y48A5A.1 164 ASDCGLHVAQYLAVLAEQKSADAIGKLEK-----IDKTRGFWRDLIMLTP 208
<-*
Y48A5A.1 - -
DUF355: domain 1 of 1, from 378 to 388: score 1.8, E = 8.8
*->VdiekPedkvNv<-*
Vdi+ Pe+ v++
Y48A5A.1 378 VDILEPEN-VEI 388
TB2_DP1_HVA22: domain 1 of 1, from 496 to 529: score 7.0, E = 1.4
*->gavilsallllfgggAllLcnligllYPaYaSvk<-*
+ +++++++++ ++ ll+c + l YP+Y S++
Y48A5A.1 496 SLSFFAKFSSVKEVSCLLACTRRALTYPLYRSFQ 529
SHQ1: domain 1 of 1, from 420 to 612: score 404.8, E = 3.1e-132
*->kayleWYkdqeksnqaqllefsdEerkqLrdqlpkksYlldnikcvy
+a+++ s++aq+le+sdE+r++L+d++++k+++++n+++v+
Y48A5A.1 420 LAVIS-------SKFAQKLEISDEDRTKLKDLKKSKTSAKINGNDVE 459
ictSLidilfAYcYDqRvtegeptcESgWnigkLSPtlScldeqfknvev
i+tSLidi+f+YcYDqRv+++e++cESgWn++kLSP+lS+++++++++
Y48A5A.1 460 IMTSLIDIVFGYCYDQRVNDWESACESGWNCAKLSPSLSFFAKFSSVK-- 507
lelNSifkikiKvfkDsfliliAfiqCLLAgiRRaLtYPLYRnFdLamka
++++ LA++RRaLtYPLYR+F+L++++
Y48A5A.1 508 --------------------EVSCL---LACTRRALTYPLYRSFQLTQRV 534
wrDvieiLkgGGGkravLrvLLdiHkiFeesddvrYiyNdlyLeDYivWv
++Dv++++++GGG++a+L++L+d+H+iF+es+++rYi+Ndl+++DYi+W
Y48A5A.1 535 IQDVCHVITAGGGRPALLHILCDLHRIFIESGEFRYILNDLMIADYIFW- 583
TSIqtvsdevLraLAeeLkEvsltkekedWPLe<-*
Iqtv+de+L++++++L+E+s++++k+d ++
Y48A5A.1 584 --IQTVPDEILTRIQTDLTEISGKIDKYD--IG 612