hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48B6A.14
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Query:  Y48B6A.14  CE29377  locus:hmg-1.1  status:Confirmed TR:Q9U2A0 protein_id:CAB54448.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
HMG_box        HMG (high mobility group) box             83.0    1.1e-21   1
Chitin_synth_2 Chitin synthase                            5.5        0.5   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
HMG_box          1/1      28    92 ..     1    69 []    83.0  1.1e-21
Chitin_synth_2   1/1      70    94 ..   525   548 .]     5.5      0.5

Alignments of top-scoring domains:
HMG_box: domain 1 of 1, from 28 to 92: score 83.0, E = 1.1e-21
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      PKR++sAFf+++qe+R+ ik+  Pg+ +a+++k++G +W  L++  K
   Y48B6A.14    28    PKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTD--K 70

                   apYeakAekeKarYekempeYk<-*
                    ++e+kA+ +K+rYe ++++Yk
   Y48B6A.14    71 SRWEKKAADDKKRYEVDIANYK    92

Chitin_synth_2: domain 1 of 1, from 70 to 94: score 5.5, E = 0.5
                   *->rerweaqtskd.tRSelsglsrkek<-*
                      ++rwe++++ d++R e++++++k+
   Y48B6A.14    70    KSRWEKKAADDkKRYEVDIANYKKS    94

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