hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48B6A.2
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Query:  Y48B6A.2  CE22117  locus:rpl-43  status:Confirmed TR:Q9U2A8 protein_id:CAB54440.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Ribosomal_L37ae Ribosomal L37ae protein family          200.3    2.9e-56   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Ribosomal_L37ae   1/1       2    91 .]     1    90 [.   200.3  2.9e-56

Alignments of top-scoring domains:
Ribosomal_L37ae: domain 1 of 1, from 2 to 91: score 200.3, E = 2.9e-56
                   *->akRTKKVGivGkyGpRYGaslRrtVkkiEikqhaKYvCpfCGkkavK
                      akRTKKVGivGkyG+RYGaslR++ kk+E+ qh++Y+C+fCGk+a+K
    Y48B6A.2     2    AKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMK 48

                   RkatGIWeCkkCgkvvAGGAYtpvTpaaktVrsairRLrelkE<-*
                   RkatGIW+C kC kvvAGGAY++ T+ a+tVrs+irRLr+lkE
    Y48B6A.2    49 RKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE    91

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