Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48B6A.8
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Query:  Y48B6A.8  CE28131  locus:ace-3  status:Partially_confirmed TR:Q9U295 protein_id:CAB54453.2

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
COesterase Carboxylesterase                             673.5   1.1e-198   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
COesterase   1/1       3   564 ..     1   592 []   673.5 1.1e-198

Alignments of top-scoring domains:
COesterase: domain 1 of 1, from 3 to 564: score 673.5, E = 1.1e-198
                   *->mglllllllllllllavvataptsp.edp.vVeTsyvgGkvrGlrvk
                        + lllll++ ++l v+++++++p++   +V+T++  G+vrG+  +
    Y48B6A.8     3    RRRVLLLLLSTTTFLRVSTAQQDEPkASVvEVQTKL--GTVRGTESD 47

                   vdggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldATkygpaCp
                   + +  k v++FlG+P+A+PP+ e+RFkkP P + pW+g+  A++ +paC+
    Y48B6A.8    48 HGN--KRVRSFLGVPFAEPPINEHRFKKPTP-ARPWNGTISANTLSPACF 94

                   Q.ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytPklasenkk
                   Q++d + p f+      gsemwn+nt+  +SEDCLY+N+++P++a  n
    Y48B6A.8    95 QgRDSYDPTFW------GSEMWNANTP--VSEDCLYVNIWAPADAY-N-- 133

                   lPVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGF
                   l+V+Vw +GGGF++Gs+   sl +ydg++la +++V+VV+iNYR+G++G
    Y48B6A.8   134 LTVLVWLFGGGFWYGSP---SLLLYDGKELATRGNVIVVNINYRVGPFGY 180

                   LstgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGA
                   L ++ +++p   GN+G+lDQ+lAL W++++I +FGG+P ++ l GeSAGA
    Y48B6A.8   181 LFLDHEDVP---GNMGMLDQQLALYWIRDHIFSFGGNPARISLVGESAGA 227

                   aSVsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkll
                   aS+ ++l++ p+s+gLF+  IlqSGs  + w+++s+ +a +++++lA l+
    Y48B6A.8   228 ASIVAHLIA-PASKGLFQNGILQSGSLDNKWSMDSpKRAKQKSTALADLV 276

                   GCpgedstelleCLRkksaeelldaqeklllldevgffpffaFgPvvdGd
                   GC+++  t+  +CLR+ +a+ l+d+ +  ++  ++  fp   F+ v  +
    Y48B6A.8   277 GCNQTKITDQTACLRNTPAQLLIDNIW--NVGLNFLEFP---FAIVSKDQ 321

                   tpdaflpkdPeellkegnfn.kvPlliGvtsdEGllflayll.dp.esad
                     ++f + d  ++l+eg + ++v+l++G++ dEG ++  y+l ++ +++
    Y48B6A.8   322 --NFFKHLDGFIALREGTYStDVNLMFGINHDEGNFWNIYNLaKFfDKQS 369

                   llslldnedlflellpellpgaselltpklreeiadalkeeYtdd.dd.n
                     + ld+++ f+e +   +  ++el +       a+++++  +  +d++
    Y48B6A.8   370 VKPGLDRDE-FHECVDTAFAVQPELVRT------AAKYVYSDPKCtDPkK 412

                   seesr.ealvdllsDylFvcpilrlaaar..lakggapvYlYrFdyrssf
                    ++ ++e++ ++++Dy+F+c  +++a++++++a ++++v++Y+Fd++ss
    Y48B6A.8   413 KTDFYtEQVNQMVGDYFFTCDSIWFAHNYpkMAGNQSNVFVYYFDQPSS- 461

                   sfnqylinllwppwmgvsHgdelsYvFGnpls.k.lyteeeeklssrrmm
                          +++wp+w+gv+Hg+e++YvFG+pl +++  +++ee+ +s++ +
    Y48B6A.8   462 -------ANPWPKWTGVMHGYEIEYVFGVPLHnTtAGYTKEEMDVSEKVI 504

                   rywtnFAktGnPN....ngessglpkWppytseeqkYyllntlltistk.
                   ++wt+FA+tG+P+ +++  ++++++kW++y+++     +++t ++i t++
    Y48B6A.8   505 DFWTTFANTGVPSlrkrAVGTTQKIKWDRYDGT-----DHTTWMNIKTGs 549

                   lreedpr.kvkcafw<-*
                   +r+ ++++kv+c+ w
    Y48B6A.8   550 FRMIQEIkKVECDLW    564



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