Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48C3A.17
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Query: Y48C3A.17 CE24382 locus:efl-2 status:Partially_confirmed TR:Q9U289 protein_id:CAB60421.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
E2F_TDP Transcription factor E2F/dimerisation partne 40.0 2.7e-10 1
Pellino Pellino 3.7 0.99 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
E2F_TDP 1/1 36 137 .. 1 125 [. 40.0 2.7e-10
Pellino 1/1 210 225 .. 1 16 [. 3.7 0.99
Alignments of top-scoring domains:
E2F_TDP: domain 1 of 1, from 36 to 137: score 40.0, E = 2.7e-10
*->GlRhrseKslekvtkKfvtllnEvADgvVdlnaannLanrLavqkqa
rs sl+++t +f +l + +v+ ln+ a+ L
Y48C3A.17 36 ----RSQQSLGLITQRFMSLRQ--RNEVLNLNEV---AKELNIS--- 70
YDqKNIkRRiYDilNVLegINiIeKkSKkeIqWiGLPAnSaqecqnleVe
kRR+YD NVLeg eK K++I+WiG n ++e ++le
Y48C3A.17 71 ------KRRVYDVINVLEGLGYVEKVEKNNIRWIG-DNNNSEEQNALEAR 113
kerRlerIkqkseqLeemelQldafknL<-*
+ e + q Le+m++ a + L
Y48C3A.17 114 V----EMLRQQEKLLELMIRDAQAIIEL 137
Pellino: domain 1 of 1, from 210 to 225: score 3.7, E = 0.99
*->ifspedsnepdkddvi<-*
+ +pe+++e+d+ddv+
Y48C3A.17 210 NDPPEYGDEEDEDDVK 225