Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48E1B.14
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Query: Y48E1B.14 CE28988 status:Partially_confirmed TR:Q95Q20 protein_id:CAC70107.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PXA PXA domain 402.8 3.2e-117 1
PX PX domain 80.7 3.1e-20 1
Cnd3_C Chromosome condensation protein 3, C-termina 3.4 5.4 1
OEP Outer membrane efflux protein 3.2 7.9 1
AmoA Putative ammonia monooxygenase 2.8 7.8 1
DUF518 Protein of unknown function (DUF518) 2.1 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AmoA 1/1 162 176 .. 1 15 [. 2.8 7.8
DUF518 1/1 155 176 .. 453 474 .] 2.1 7.9
Cnd3_C 1/1 346 359 .. 415 428 .] 3.4 5.4
PXA 1/1 234 436 .. 1 226 [] 402.8 3.2e-117
OEP 1/1 539 571 .. 136 168 .. 3.2 7.9
PX 1/1 717 830 .. 1 134 [] 80.7 3.1e-20
Alignments of top-scoring domains:
AmoA: domain 1 of 1, from 162 to 176: score 2.8, E = 7.8
*->wMiGpllaaIvlrkv<-*
iG+lla+I+++k+
Y48E1B.14 162 VVIGSLLAGILFAKW 176
DUF518: domain 1 of 1, from 155 to 176: score 2.1, E = 7.9
*->ystaIlgvallvllaailarRr<-*
+++ ++v++++lla+il++
Y48E1B.14 155 FGFVSILVVIGSLLAGILFAKW 176
Cnd3_C: domain 1 of 1, from 346 to 359: score 3.4, E = 5.4
*->RkeeeaEaeqeedl<-*
R+ee+a++ q++d
Y48E1B.14 346 RDEETAYVRQISDF 359
PXA: domain 1 of 1, from 234 to 436: score 402.8, E = 3.2e-117
*->paqLeeeLesiIskIirdYVqsWYkkisvSeDasFlkeirqtlkyil
pa+L+e++e+++++I+++YV++WY++ ++S+D++F++eir++l+y++
Y48E1B.14 234 PASLNEAVENLLNEIVEQYVNGWYGG-AISRDRAFINEIRYQLRYAS 279
aelkrrlsrqDsaelissklleIlkklistiedalEavlrkaspqepite
a+l+r+++r+D+ae++s+++l+I++++i++i+ +lE++lr++ p++p+++
Y48E1B.14 280 ANLIRCIRRVDLAEFVSDQALPIASFYITRIN-ELEQKLRES-PTPPRSL 327
idlqiaetaedNYKihkaLsekenEltKEvCRDLvCtsPKDEEkyvRqlv
++++iae+++d ih+aLs++++E++ yvRq++
Y48E1B.14 328 LETKIAEQLDD---IHVALSGRDEETA-----------------YVRQIS 357
elLLklLlPedelesrlhDDDsPLRLFGRGKnERPWPsKsvrvllrEvLa
++L+++Ll+e++l++r+hDDDsPLRLFGRGKnERPWPsKsvr++lrE+L+
Y48E1B.14 358 DFLIPRLLDETRLAGRAHDDDSPLRLFGRGKNERPWPSKSVRGFLREMLT 407
tavilplIsklSdPDtiNlviIllfsesr<-*
+av+lp++++l++PDtiN+++Illf+e+r
Y48E1B.14 408 NAVLLPVFDMLTQPDTINYWLILLFDEHR 436
OEP: domain 1 of 1, from 539 to 571: score 3.2, E = 7.9
*->ltaqeklkaaketleaakeslqlarqryeaGlg<-*
++aqe++++a++ +e +k +++ + +r+ +G +
Y48E1B.14 539 ESAQERVRIAESLVEQYKSAVEVNDIRVLEGII 571
PX: domain 1 of 1, from 717 to 830: score 80.7, E = 3.1e-20
*->dpilqvvvvdpetsrkgegdkkhtyyvyeittktn......ewsVkR
+++qv +++ s d++++++++e+++ + +++++++ws++R
Y48E1B.14 717 VNVAQVNGLRDKIS-----DRVIFVFIIEVERPDAkphetqRWSIHR 758
RYsdFeeLhekLlrkfpdlgrilPplPpKklfgryrkeslemtsvkhssn
++++F+ L +kL ++++ ++++ plP +k+f++
Y48E1B.14 759 SFNEFYVLESKLNEFHG-DSLRFSPLPTRKTFVT---------------- 791
nfdeefiekRrkgLeeyLqkllqhPelsnhrlsevvleFLess<-*
d+ f e++r + +L l++ ++l + se++l FL+s+
Y48E1B.14 792 -RDKPFMEQHRLIFSTFLSTLSKQRILNR---SELLLAFLSSN 830