Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48E1B.9
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Query: Y48E1B.9 CE14868 C-type lectin binding domain status:Partially_confirmed TR:O18202 protein_id:CAB07697.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 86.2 6.5e-22 3
H-kinase_dim Signal transducing histidine kinase, hom 8.4 1 1
DUF536 Protein of unknown function, DUF536 6.4 4 1
LEA Late embryogenesis abundant protein 4.6 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF536 1/1 204 237 .. 1 34 [. 6.4 4
H-kinase_dim 1/1 219 246 .. 34 64 .] 8.4 1
lectin_c 1/3 261 356 .. 1 125 [] 62.2 9.1e-15
LEA 1/1 388 417 .. 41 75 .] 4.6 9.6
lectin_c 2/3 586 605 .. 1 22 [. 20.2 0.00086
lectin_c 3/3 654 678 .. 96 125 .] 5.1 7.5
Alignments of top-scoring domains:
DUF536: domain 1 of 1, from 204 to 237: score 6.4, E = 4
*->nsvldeQLeekdsriEttldtlkkqikelqkLLD<-*
+++ QL + + r Et + tlk+ +++l kL+D
Y48E1B.9 204 DEEFPTQLQNFEGRTETEIRTLKEKVARLEKLID 237
H-kinase_dim: domain 1 of 1, from 219 to 246: score 8.4, E = 1
*->eldernsseLaealdeLsrltreLQdsVMki<-*
e+++ + L+e +++L++l+ LQ Mk
Y48E1B.9 219 ETEI---RTLKEKVARLEKLIDGLQSVLMKE 246
lectin_c: domain 1 of 3, from 261 to 356: score 62.2, E = 9.1e-15
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk..sn
e+k+W+ Ae Cq+ g+h L++I++++ + f+t+l++ ++ +
Y48E1B.9 261 ERKSWDNAERHCQGFGAH--LAIIDNEAKN----GFVTNLINSseTS 301
tyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEd
+ aWIG+ + ++ t+ +++ +t n + +P +
Y48E1B.9 302 DFAWIGM-------KTKT----TTQTSTPFT-NFDSESP--------IDG 331
CveiytdtdflaGkWnDepCdsklpyvCef<-*
C+++ ++ G W ++C + +p+vC+
Y48E1B.9 332 CAVMDAK-----GVWSIRSCIQLRPFVCQI 356
LEA: domain 1 of 1, from 388 to 417: score 4.6, E = 9.6
*->dkakekkageaKDktgnkakekaeeaKdkasdakd<-*
d+akek ++K+ k+k k + +K k + +
Y48E1B.9 388 DSAKEK-YHAGKE----KLKTKISDVKSKLRGPAP 417
lectin_c: domain 2 of 3, from 586 to 605: score 20.2, E = 0.00086
*->esktWaeAelaCqkegghAHLv<-*
e+++W++A+l C+++g+h L+
Y48E1B.9 586 ERMNWNDAQLHCEELGSH--LA 605
lectin_c: domain 3 of 3, from 654 to 678: score 5.1, E = 7.5
*->CveiytdtdflaGkWnDepCdsklpyvCef<-*
C+++ ++ G W +C lpy+C+
Y48E1B.9 654 CGVVDRN-----GTWSISSCAIELPYLCQA 678