Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48E1B.10
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Query: Y48E1B.10 CE14870 glutathione S-transferase status:Confirmed TR:O01987 protein_id:CAB07700.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 72.9 9.4e-20 1
GST_C Glutathione S-transferase, C-terminal domain 18.9 0.00048 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 74 .. 1 88 [] 72.9 9.4e-20
GST_C 1/1 80 193 .. 1 121 [] 18.9 0.00048
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 74: score 72.9, E = 9.4e-20
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
++ ++fngrg + + r l a +G +ye++r++
Y48E1B.10 3 EYKFYYFNGRG--LGDVSRQLFA-LSGTKYEDIRIEH---------- 36
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+++ + +P+m pfgq+P+L+ g+++ +S+AIarYla+
Y48E1B.10 37 ADWPAQKPKM-PFGQMPVLELSS--GLQIPQSMAIARYLAK 74
GST_C: domain 1 of 1, from 80 to 193: score 18.9, E = 0.00048
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkperg.aekde
Gk++ +e a d + d +f d + +++ ++y k + ++ ++e
Y48E1B.10 80 GKTD-----EEAALADALID-QFKDFYAEIKPYYYAKIGVLqNDTEE 120
eeveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwler
e ++ ++ +k+l ++ + Lk + + +l lt+AD++ + +
Y48E1B.10 121 EKKKTLIPARDKFLTIIGKFLKLSISGFLFSGGLTYADLMICDN-----M 165
ldpdplf...reeyPnLkawrkrvaarp<-*
+ + +++++ + eyP +kaw+++v p
Y48E1B.10 166 RTLIAWWpeyLNEYPDIKAWYQKVDGIP 193