Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48E1C.3
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Query: Y48E1C.3 CE14882 Probable rabGAP domains status:Partially_confirmed TR:O18207 protein_id:CAB07701.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TBC TBC domain 143.4 1.2e-40 1
UPF0029 Uncharacterized protein family UPF0029 6.7 1.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TBC 1/1 10 178 .. 119 341 .] 143.4 1.2e-40
UPF0029 1/1 447 457 .. 1 11 [. 6.7 1.4
Alignments of top-scoring domains:
TBC: domain 1 of 1, from 10 to 178: score 143.4, E = 1.2e-40
*->ekDlsRTfpdeiffqtrlaeqqlkkdqdldaydkDEfddeddknepp
ekD+ RT+++ +ffq + ++
Y48E1C.3 10 EKDVARTDRTVPFFQ---------------------------GDDNV 29
sikqLrrlLvaYswknpqehlgYvQGMnvilspLLlflkhgvdldeidee
+ +L+++L +Y+ +n++ lgYvQGM++ +spLL ++k de
Y48E1C.3 30 NLVHLHNVLMTYVMYNFD--LGYVQGMSDFASPLLFVMK--------DEV 69
qAFwclvkLmdnylpqkyflndlsglnedlrvLdslvkeslPeLyshlkk
++Fwc+v Lm+ + f d+ +++ ++ +L +lv +++P+L+++l++
Y48E1C.3 70 DTFWCFVGLMELTQKN--FETDQAFIKLQMNQLRDLVMIINPKLANYLES 117
kenktgsgkKknllaldltllifafpwfLtlFarelPleivlrIwDilft
++ f+f+w L++F+re++ ++ ++w++l++
Y48E1C.3 118 E---------------KSDDMYFCFRWVLVWFKREFSFLDTCKLWEVLWS 152
yYlgshflifvalAiLkllkskllkh<-*
++fl+++++AiL++ ++++
Y48E1C.3 153 GQPCPRFLLLICVAILDSQTNIIIDN 178
UPF0029: domain 1 of 1, from 447 to 457: score 6.7, E = 1.4
*->ikkSrFiAhla<-*
ik+SrF++hl+
Y48E1C.3 447 IKRSRFYGHLQ 457